myRT

myRT report for GCA_003052425.1_ASM305242v1

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Seq: QARA01000028.1 Salmonella enterica subsp. enterica strain CFSAN058493 SRR6921451_NODE_28, whole genome shotgun sequence (39604 bp)
Overview 1 RT 1: 20535-29069 bp Neighborhood of RT #1 [20535, 29518] GanA Transposase_mut Transposase_20 RVT-GII GIIM Phage_int_SAM_4 INT_RitA_C_like Phage_int_SAM_1 INT_RitC_C_like RVT_N RVT-GII DDE_Tnp_1_5 Feature: gene Location: 20535-22583 bp Feature: domain Description: GanA Location: 20568-22578 bp Feature: domain Description: GanA Location: 20568-22578 bp Feature: gene Location: 22732-23268 bp Feature: domain Description: Transposase_mut Location: 22771-22945 bp Feature: domain Description: Transposase_mut Location: 22771 -22945 bp Feature: domain Description: Transposase_20 Location: 22951-23137 bp Feature: domain Description: Transposase_20 Location: 22951 -231 37 bp Feature: gene Location: 23401-24138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23431-23617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23431 -2361 7 bp Feature: domain Description: GIIM Note: maturase Location: 23671-23905 bp Feature: domain Description: GIIM Note: maturase Location: 23671 -23905 bp Feature: gene Location: 24193-24324 bp Feature: gene Location: 24330-25229 bp Feature: domain Description: Phage_int_SAM_4 Location: 24669-24888 bp Feature: domain Description: Phage_int_SAM_4 Location: 24669-24888 bp Feature: domain Description: INT_RitA_C_like Location: 24900-25194 bp Feature: domain Description: INT_RitA_C_like Location: 24900-251 94 bp Feature: gene Location: 26196-26516 bp Feature: domain Description: Phage_int_SAM_1 Location: 26241-26484 bp Feature: domain Description: Phage_int_SAM_1 Location: 26241 -26484 bp Feature: gene Location: 26596-27153 bp Feature: domain Description: INT_RitC_C_like Location: 26599-27073 bp Feature: domain Description: INT_RitC_C_like Location: 26599-27073 bp Feature: gene Location: 27203-27874 bp Feature: domain Description: RVT_N Location: 27206-27398 bp Feature: domain Description: RVT_N Location: 27206-27398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27443-27818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27443-2781 8 bp Feature: gene Location: 27964-28251 bp Feature: gene Location: 28649-29518 bp Feature: domain Description: DDE_Tnp_1_5 Location: 28751-29069 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 28751 -29069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GanA (COG1874), Transposase_mut (pfam00872), Transposase_20 (pfam02371), RVT-GII, GIIM (pfam08388), Phage_int_SAM_4 (pfam13495), INT_RitA_C_like (cd01188), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), RVT_N (pfam13655)
DDE_Tnp_1_5 (pfam13737)

Seq: QARA01000006.1 Salmonella enterica subsp. enterica strain CFSAN058493 SRR6921451_NODE_6, whole genome shotgun sequence (321769 bp)
Overview 1 RT 1: 200129-205724 bp Neighborhood of RT #1 [200129, 205724] FimC PRK15223 RVT-UG4 Feature: gene Location: 200129-200920 bp Feature: domain Description: FimC Location: 200216-200906 bp Feature: domain Description: FimC Location: 2 002 16-2 00906 bp Feature: gene Location: 201047-203560 bp Feature: domain Description: PRK15223 Location: 201050-203558 bp Feature: domain Description: PRK152 2 3 Location: 2 01050-2 03558 bp Feature: gene Location: 203578-204552 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 203932-204379 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2 03932 -2 04379 bp Feature: gene Location: 204598-205062 bp Feature: gene Location: 205335-205724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), PRK15223 (fimbrial biogenesis outer membrane usher protein), RVT-UG4