myRT

myRT report for GCA_003052605.1_ASM305260v1

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Seq: QASO01000126.1 Pseudomonas indoloxydans strain JCM 14246, whole genome shotgun sequence (13842 bp)
Overview 1 RT 1: 2-3321 bp Neighborhood of RT #1 [2, 3344] RVT-GII GIIM COG4757 AcrR Feature: gene Location: 2-208 bp Feature: gene Location: 481-1773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1 351 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1615 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 7-1 61 5 bp Feature: gene Location: 1888-2766 bp Feature: domain Description: COG4757 Location: 1921-2734 bp Feature: domain Description: COG4757 Location: 1 921 -2734 bp Feature: gene Location: 2763-3344 bp Feature: domain Description: AcrR Location: 2775-3321 bp Feature: domain Description: AcrR Location: 2775-3321 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4757 (Predicted alpha/beta hydrolase ), AcrR (COG1309), RVT-GII, GIIM (pfam08388)

Seq: QASO01000032.1 Pseudomonas indoloxydans strain JCM 14246, whole genome shotgun sequence (91919 bp)
Overview 1 RT 1: 85797-91675 bp Neighborhood of RT #1 [85797, 91833] PilX PilY1 PilY1 RVT-GII GIIM Feature: gene Location: 85797-86339 bp Feature: domain Description: PilX Location: 85809-86073 bp Feature: domain Description: PilX Location: 85809-86073 bp Feature: gene Location: 86350-89730 bp Feature: domain Description: PilY1 Location: 87565-87805 bp Feature: domain Description: PilY1 Location: 87565-87805 bp Feature: domain Description: PilY1 Location: 88210-89494 bp Feature: domain Description: PilY1 Location: 882 10-89494 bp Feature: gene Location: 90541-91833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90799-91411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90799-91411 bp Feature: domain Description: GIIM Note: maturase Location: 91477-91675 bp Feature: domain Description: GIIM Note: maturase Location: 91477-91675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PilX (pfam13681), PilY1 (COG3419), RVT-GII, GIIM (pfam08388)

Seq: QASO01000036.1 Pseudomonas indoloxydans strain JCM 14246, whole genome shotgun sequence (39404 bp)
Overview 1 RT 1: 3642-9811 bp Neighborhood of RT #1 [3642, 9834] PRK05451 RNaseT RVT-GII GIIM COG1033 Feature: gene Location: 3642-4721 bp Feature: domain Description: PRK05451 Location: 3681-4704 bp Feature: domain Description: PRK05451 Location: 3 681-4704 bp Feature: gene Location: 4718-5392 bp Feature: domain Description: RNaseT Location: 4784-5378 bp Feature: domain Description: RNaseT Location: 4784-53 78 bp Feature: gene Location: 5571-6896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5832-6447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 583 2-6447 bp Feature: domain Description: GIIM Note: maturase Location: 6501-6729 bp Feature: domain Description: GIIM Note: maturase Location: 6501-6729 bp Feature: gene Location: 7174-7314 bp Feature: gene Location: 7480-9834 bp Feature: domain Description: COG1033 Location: 7516-9811 bp Feature: domain Description: COG103 3 Location: 7516-9811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05451 (dihydroorotase; Provisional), RNaseT (TIGR01298), RVT-GII, GIIM (pfam08388), COG1033 (Predicted exporter protein, RND superfamily )

Seq: QASO01000037.1 Pseudomonas indoloxydans strain JCM 14246, whole genome shotgun sequence (118775 bp)
Overview 1 RT 1: 87921-93703 bp Neighborhood of RT #1 [87921, 93993] Inovirus_Gp2 IS5 RVT_N RVT-GII GIIM IS5 AAA_15 TOPRIM_OLD Feature: gene Location: 87921-88517 bp Feature: domain Description: Inovirus_Gp2 Location: 87966-88506 bp Feature: domain Description: Inovirus_Gp2 Location: 87966-88506 bp Feature: gene Location: 88681-89214 bp Feature: domain Description: IS5 Location: 88870-89203 bp Feature: domain Description: IS5 Location: 88870-89203 bp Feature: gene Location: 89807-91312 bp Feature: RT Description: RVT_N Location: 89888-90113 bp Feature: RT Description: RVT_N Location: 89888-90113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90164-90806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90164 -90806 bp Feature: domain Description: GIIM Note: maturase Location: 90857-91091 bp Feature: domain Description: GIIM Note: maturase Location: 90857-91091 bp Feature: gene Location: 91424-91843 bp Feature: domain Description: IS5 Location: 91427-91811 bp Feature: domain Description: IS5 Location: 914 27-91811 bp Feature: gene Location: 92110-93993 bp Feature: domain Description: AAA_15 Location: 92113-93262 bp Feature: domain Description: AAA_15 Location: 92113-93262 bp Feature: domain Description: TOPRIM_OLD Location: 93442-93703 bp Feature: domain Description: TOPRIM_OLD Location: 934 4 2-93703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Inovirus_Gp2 (pfam11726), IS5 (COG3039), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), AAA_15 (pfam13175), TOPRIM_OLD (cd01026)

Seq: QASO01000071.1 Pseudomonas indoloxydans strain JCM 14246, whole genome shotgun sequence (25081 bp)
Overview 1 RT 1: 87-3691 bp Neighborhood of RT #1 [87, 3711] RVT-GII GIIM EndA his_ut_repres Feature: gene Location: 87-1379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 345-957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 345 -95 7 bp Feature: domain Description: GIIM Note: maturase Location: 1023-1221 bp Feature: domain Description: GIIM Note: maturase Location: 1023-1221 bp Feature: gene Location: 2212-2871 bp Feature: domain Description: EndA Location: 2467-2857 bp Feature: domain Description: EndA Location: 2467-285 7 bp Feature: gene Location: 2959-3711 bp Feature: domain Description: his_ut_repres Location: 3016-3691 bp Feature: domain Description: his_ut_repres Location: 3016-3691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EndA (COG2356), his_ut_repres (TIGR02018), RVT-GII, GIIM (pfam08388)

Seq: QASO01000093.1 Pseudomonas indoloxydans strain JCM 14246, whole genome shotgun sequence (41069 bp)
Overview 1 RT 1: 36312-41068 bp Neighborhood of RT #1 [36312, 41068] AtoC DadA RVT-GII GIIM Feature: gene Location: 36312-37652 bp Feature: domain Description: AtoC Location: 36321-37650 bp Feature: domain Description: AtoC Location: 36 321-376 50 bp Feature: gene Location: 37743-38942 bp Feature: domain Description: DadA Location: 37857-38928 bp Feature: domain Description: DadA Location: 37857-38928 bp Feature: gene Location: 39297-40658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39624-40236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 396 24-40236 bp Feature: domain Description: GIIM Note: maturase Location: 40302-40500 bp Feature: domain Description: GIIM Note: maturase Location: 40302-40500 bp Feature: gene Location: 40862-41068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AtoC (COG2204), DadA (COG0665), RVT-GII, GIIM (pfam08388)