myRT

myRT report for GCA_003053035.1_ASM305303v1

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Seq: QAZO01000016.1 Lactobacillus plantarum strain DS18_9 DS18_9_16_length_53693_cov_33.969626, whole genome shotgun sequence (53693 bp)
Overview 1 RT 1: 18101-21333 bp Neighborhood of RT #1 [18101, 21341] RVT-Retrons gpmA Feature: gene Location: 18101-18229 bp Feature: gene Location: 18382-18534 bp Feature: gene Location: 18836-19780 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18965-19511 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 8965-1 951 1 bp Feature: gene Location: 19853-20836 bp Feature: gene Location: 21126-21341 bp Feature: domain Description: gpmA Location: 21129-21333 bp Feature: domain Description: gpmA Location: 21 1 29-21 333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, gpmA (PRK14120)

Seq: QAZO01000022.1 Lactobacillus plantarum strain DS18_9 DS18_9_22_length_32615_cov_76.053958, whole genome shotgun sequence (32615 bp)
Overview 1 RT 1: 20818-24801 bp Neighborhood of RT #1 [20818, 24801] HTH_ARSR DDE_Tnp_Tn3 RVT-GII GIIM PRK09564 Feature: gene Location: 20818-21171 bp Feature: domain Description: HTH_ARSR Location: 20878-21091 bp Feature: domain Description: HTH_ARSR Location: 2 0878-2 1091 bp Feature: gene Location: 21377-21718 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 21383-21650 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2 1383-2 1650 bp Feature: gene Location: 21969-22784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21972-22338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1972 -2 2 338 bp Feature: domain Description: GIIM Note: maturase Location: 22392-22620 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 392 -2 2 62 0 bp Feature: gene Location: 22919-24283 bp Feature: domain Description: PRK09564 Location: 22934-24257 bp Feature: domain Description: PRK09564 Location: 2 2 934-2 42 57 bp Feature: gene Location: 24415-24801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), DDE_Tnp_Tn3 (pfam01526), RVT-GII, GIIM (pfam08388), PRK09564 (coenzyme A disulfide reductase; Reviewed)