myRT

myRT report for GCA_003053565.1_ASM305356v1

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Seq: QAXS01000004.1 Halanaerobium saccharolyticum strain WC1 Ga0213556_104, whole genome shotgun sequence (128720 bp)
Overview 1 RT 1: 69479-74910 bp Neighborhood of RT #1 [69479, 74918] YmdB SpoVS RVT-GII GIIM OmpR HK_WalK PRK11360 Feature: gene Location: 69479-70255 bp Feature: domain Description: YmdB Location: 69491-70238 bp Feature: domain Description: YmdB Location: 69491 -70238 bp Feature: gene Location: 70358-70618 bp Feature: domain Description: SpoVS Location: 70361-70616 bp Feature: domain Description: SpoVS Location: 70361 -7061 6 bp Feature: gene Location: 71456-72562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71621-72242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 621 -72242 bp Feature: domain Description: GIIM Note: maturase Location: 72287-72479 bp Feature: domain Description: GIIM Note: maturase Location: 72287-72479 bp Feature: gene Location: 72823-73500 bp Feature: domain Description: OmpR Location: 72829-73489 bp Feature: domain Description: OmpR Location: 72829-73489 bp Feature: gene Location: 73500-74918 bp Feature: domain Description: HK_WalK Location: 73518-74241 bp Feature: domain Description: HK_WalK Location: 7351 8-74241 bp Feature: domain Description: PRK11360 Location: 74274-74910 bp Feature: domain Description: PRK1 1 360 Location: 74274-7491 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YmdB (pfam13277), SpoVS (pfam04232), RVT-GII, GIIM (pfam08388), OmpR (COG0745), HK_WalK (NF033092), PRK11360 (two-component system sensor histidine kinase AtoS)

Seq: QAXS01000009.1 Halanaerobium saccharolyticum strain WC1 Ga0213556_109, whole genome shotgun sequence (91991 bp)
Overview 1 RT 1: 67510-71220 bp Neighborhood of RT #1 [67510, 71220] Nudix_Hydrolase_1 TsaA RVT-GII GIIM Feature: gene Location: 67510-68058 bp Feature: domain Description: Nudix_Hydrolase_1 Location: 67648-68041 bp Feature: domain Description: Nudix_Hydrolase_1 Location: 67648-68041 bp Feature: gene Location: 68156-68632 bp Feature: domain Description: TsaA Location: 68159-68588 bp Feature: domain Description: TsaA Location: 68159-68588 bp Feature: gene Location: 68781-70229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69165-69783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69165-69783 bp Feature: domain Description: GIIM Note: maturase Location: 69834-70065 bp Feature: domain Description: GIIM Note: maturase Location: 69834-70065 bp Feature: gene Location: 70680-70916 bp Feature: gene Location: 70921-71220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nudix_Hydrolase_1 (cd03674), TsaA (COG1720), RVT-GII, GIIM (pfam08388)

Seq: QAXS01000011.1 Halanaerobium saccharolyticum strain WC1 Ga0213556_111, whole genome shotgun sequence (79063 bp)
Overview 1 RT 1: 122-6339 bp Neighborhood of RT #1 [122, 6374] PpiB PBP1_ABC_uncharacterized_transporter RVT-GII PG_binding_1 NlpD NlpD TrmL Feature: gene Location: 122-643 bp Feature: domain Description: PpiB Location: 146-605 bp Feature: domain Description: PpiB Location: 146-605 bp Feature: gene Location: 865-1839 bp Feature: domain Description: PBP1_ABC_uncharacterized_transporter Location: 961-1798 bp Feature: domain Description: PBP1_ABC_uncharacterized_transporter Location: 961-1798 bp Feature: gene Location: 1983-3431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2223-2847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2223 -2847 bp Feature: gene Location: 4558-5829 bp Feature: domain Description: PG_binding_1 Location: 4660-4825 bp Feature: domain Description: PG_binding_1 Location: 4660-4825 bp Feature: domain Description: NlpD Location: 4858-5038 bp Feature: domain Description: NlpD Location: 4858-503 8 bp Feature: domain Description: NlpD Location: 5071-5827 bp Feature: domain Description: NlpD Location: 5071-5827 bp Feature: gene Location: 5880-6374 bp Feature: domain Description: TrmL Location: 5892-6339 bp Feature: domain Description: TrmL Location: 5892-63 3 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PpiB (COG0652), RVT-GII, PG_binding_1 (pfam01471), NlpD (COG0739), TrmL (COG0219)

Seq: QAXS01000013.1 Halanaerobium saccharolyticum strain WC1 Ga0213556_113, whole genome shotgun sequence (63938 bp)
Overview 1 RT 1: 61092-63672 bp Neighborhood of RT #1 [61092, 63821] PBP2_UgpB GlnK RVT-GII GIIM Feature: gene Location: 61092-62423 bp Feature: domain Description: PBP2_UgpB Location: 61170-62385 bp Feature: domain Description: PBP2_UgpB Location: 61170-62385 bp Feature: gene Location: 62663-62995 bp Feature: domain Description: GlnK Location: 62666-62990 bp Feature: domain Description: GlnK Location: 62666-62990 bp Feature: gene Location: 63099-63821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63108-63390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63108-63390 bp Feature: domain Description: GIIM Note: maturase Location: 63441-63672 bp Feature: domain Description: GIIM Note: maturase Location: 634 4 1-63672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_UgpB (cd14748), GlnK (COG0347), RVT-GII, GIIM (pfam08388)

Seq: QAXS01000018.1 Halanaerobium saccharolyticum strain WC1 Ga0213556_118, whole genome shotgun sequence (58151 bp)
Overview 1 RT 1: 55281-58065 bp Neighborhood of RT #1 [55281, 58148] YolD PRK03103 RVT-GII GIIM Feature: gene Location: 55281-55610 bp Feature: domain Description: YolD Location: 55326-55599 bp Feature: domain Description: YolD Location: 5 5 326-5 5 5 99 bp Feature: gene Location: 55626-56882 bp Feature: domain Description: PRK03103 Location: 55656-56880 bp Feature: domain Description: PRK03103 Location: 5 5 65 6-5 6880 bp Feature: gene Location: 57180-58148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57207-57828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 7207-5 7828 bp Feature: domain Description: GIIM Note: maturase Location: 57873-58065 bp Feature: domain Description: GIIM Note: maturase Location: 5 7873-5 8065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YolD (pfam08863), PRK03103 (DNA polymerase IV; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: QAXS01000046.1 Halanaerobium saccharolyticum strain WC1 Ga0213556_146, whole genome shotgun sequence (22258 bp)
Overview 1 RT 1: 17855-22172 bp Neighborhood of RT #1 [17855, 22255] MPP_GpdQ GT4_UGDG-like ECM27 RVT-GII GIIM Feature: gene Location: 17855-20077 bp Feature: domain Description: MPP_GpdQ Location: 18074-18440 bp Feature: domain Description: MPP_GpdQ Location: 18074-18440 bp Feature: domain Description: GT4_UGDG-like Location: 18905-20045 bp Feature: domain Description: GT4_UGDG-like Location: 18905-20045 bp Feature: gene Location: 20107-21126 bp Feature: domain Description: ECM27 Location: 20122-21106 bp Feature: domain Description: ECM27 Location: 20122-21106 bp Feature: gene Location: 21287-22255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21314-21935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21314-21935 bp Feature: domain Description: GIIM Note: maturase Location: 21980-22172 bp Feature: domain Description: GIIM Note: maturase Location: 21980-22172 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPP_GpdQ (cd07402), GT4_UGDG-like (cd03817), ECM27 (COG0530), RVT-GII, GIIM (pfam08388)

Seq: QAXS01000054.1 Halanaerobium saccharolyticum strain WC1 Ga0213556_154, whole genome shotgun sequence (15397 bp)
Overview 1 RT 1: 11153-15303 bp Neighborhood of RT #1 [11153, 15317] COG1033 PBP2_OpuAC_like RVT-GII Feature: gene Location: 11153-13450 bp Feature: domain Description: COG1033 Location: 11171-13433 bp Feature: domain Description: COG1033 Location: 1117 1-13433 bp Feature: gene Location: 13679-14560 bp Feature: domain Description: PBP2_OpuAC_like Location: 13781-14537 bp Feature: domain Description: PBP2_OpuAC_like Location: 137 81-14537 bp Feature: gene Location: 15015-15317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15126-15303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15126-15303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1033 (Predicted exporter protein, RND superfamily ), PBP2_OpuAC_like (cd13639), RVT-GII

Seq: QAXS01000090.1 Halanaerobium saccharolyticum strain WC1 Ga0213556_190, whole genome shotgun sequence (1350 bp)
Overview 1 RT 1: 245-1331 bp Neighborhood of RT #1 [245, 1348] RVT-GII GIIM Feature: gene Location: 245-1348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473-1094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473-1094 bp Feature: domain Description: GIIM Note: maturase Location: 1139-1331 bp Feature: domain Description: GIIM Note: maturase Location: 1139-1331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QAXS01000091.1 Halanaerobium saccharolyticum strain WC1 Ga0213556_191, whole genome shotgun sequence (1347 bp)
Overview 1 RT 1: 239-1328 bp Neighborhood of RT #1 [239, 1345] RVT-GII GIIM Feature: gene Location: 239-1345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 470-1091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 470-109 1 bp Feature: domain Description: GIIM Note: maturase Location: 1136-1328 bp Feature: domain Description: GIIM Note: maturase Location: 1136-1328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)