myRT

myRT report for GCA_003054075.1_ASM305407v1

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Seq: QBKJ01000001.1 Halanaerobium congolense strain WG5_pb Ga0205984_11, whole genome shotgun sequence (2869679 bp)
Overview 1 RT 1: 96454-103557 bp 2 RT 2: 1084887-1091571 bp 3 RT 3: 1709180-1715243 bp 4 RT 4: 2519791-2527063 bp 5 RT 5: 2597969-2603285 bp Neighborhood of RT #1 [96454, 103646] ligA pcrA RVT-GII Intron_maturas2 HNHc pcrA GIY-YIG_COG1833 Neighborhood of RT #2 [1084887, 1091571] YydB AAA_15 RVT-Retrons Neighborhood of RT #3 [1709180, 1715281] TrmL PG_binding_1 NlpD NlpD NlpD NlpD RVT-GII GIIM PBP1_ABC_uncharacterized_transporter PpiB Neighborhood of RT #4 [2519791, 2527089] FeoB FeoA RVT-GII GIIM leuS RsfS Neighborhood of RT #5 [2597969, 2603296] COG3462 COG3462 DUF305 COG3544 RVT-GII GIIM MDR_yhdh_yhfp YeiH Feature: gene Location: 96454-98451 bp Feature: domain Description: ligA Location: 96472-98449 bp Feature: domain Description: ligA Location: 96472-98449 bp Feature: gene Location: 98464-99774 bp Feature: domain Description: pcrA Location: 98467-99766 bp Feature: domain Description: pcrA Location: 98467-99766 bp Feature: gene Location: 99966-101810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100230-101067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 00230-1 01 067 bp Feature: domain Description: Intron_maturas2 Location: 101136-101502 bp Feature: domain Description: Intron_maturas2 Location: 1 01 1 36-1 01 502 bp Feature: domain Description: HNHc Note: nucleases Location: 101622-101781 bp Feature: domain Description: HNHc Note: nucleases Location: 1 01 622-1 01 781 bp Feature: gene Location: 102399-103172 bp Feature: domain Description: pcrA Location: 102420-103161 bp Feature: domain Description: pcrA Location: 1 02420-1 031 61 bp Feature: gene Location: 103203-103646 bp Feature: domain Description: GIY-YIG_COG1833 Location: 103227-103557 bp Feature: domain Description: GIY-YIG_COG1 833 Location: 1 03227-1 03557 bp Feature: gene Location: 1084887-1086683 bp Feature: domain Description: YydB Location: 1084890-1086681 bp Feature: domain Description: YydB Location: 1 084890-1 086681 bp Feature: gene Location: 1086784-1088826 bp Feature: domain Description: AAA_15 Location: 1086787-1087741 bp Feature: domain Description: AAA_1 5 Location: 1 086787-1 087741 bp Feature: gene Location: 1089140-1090141 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1089221-1089788 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 089221 -1 089788 bp Feature: gene Location: 1090260-1091114 bp Feature: gene Location: 1091149-1091571 bp Feature: gene Location: 1709180-1709674 bp Feature: domain Description: TrmL Location: 1709192-1709639 bp Feature: domain Description: TrmL Location: 1 7091 92-1 709639 bp Feature: gene Location: 1709727-1710995 bp Feature: domain Description: PG_binding_1 Location: 1709829-1709994 bp Feature: domain Description: PG_binding_1 Location: 1 709829-1 709994 bp Feature: domain Description: NlpD Location: 1710027-1710189 bp Feature: domain Description: NlpD Location: 1 71 0027-1 71 01 89 bp Feature: domain Description: NlpD Location: 1710243-1710393 bp Feature: domain Description: NlpD Location: 1 71 0243-1 71 0393 bp Feature: domain Description: NlpD Location: 1710450-1710552 bp Feature: domain Description: NlpD Location: 1 71 0450-1 71 0552 bp Feature: domain Description: NlpD Location: 1710585-1710993 bp Feature: domain Description: NlpD Location: 1 71 0585-1 71 0993 bp Feature: gene Location: 1712266-1713372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1712431-1713052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 2431 -1 71 3052 bp Feature: domain Description: GIIM Note: maturase Location: 1713097-1713289 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 3097-1 71 3289 bp Feature: gene Location: 1713564-1714538 bp Feature: domain Description: PBP1_ABC_uncharacterized_transporter Location: 1713660-1714497 bp Feature: domain Description: PBP1 _ABC_uncharacterized_transporter Location: 1 71 3660-1 71 4497 bp Feature: gene Location: 1714760-1715281 bp Feature: domain Description: PpiB Location: 1714784-1715243 bp Feature: domain Description: PpiB Location: 1 71 4784-1 71 5243 bp Feature: gene Location: 2519791-2521653 bp Feature: domain Description: FeoB Location: 2519839-2521639 bp Feature: domain Description: FeoB Location: 251 9839-2521 639 bp Feature: gene Location: 2521654-2521881 bp Feature: domain Description: FeoA Location: 2521657-2521864 bp Feature: domain Description: FeoA Location: 2521 657-2521 864 bp Feature: gene Location: 2522168-2523274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2522333-2522954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2522333-2522954 bp Feature: domain Description: GIIM Note: maturase Location: 2522999-2523191 bp Feature: domain Description: GIIM Note: maturase Location: 2522999-25231 91 bp Feature: gene Location: 2524157-2526652 bp Feature: domain Description: leuS Location: 2524163-2526647 bp Feature: domain Description: leuS Location: 25241 63-2526647 bp Feature: gene Location: 2526724-2527089 bp Feature: domain Description: RsfS Location: 2526745-2527063 bp Feature: domain Description: RsfS Location: 2526745-2527063 bp Feature: gene Location: 2597969-2598286 bp Feature: domain Description: COG3462 Location: 2597987-2598095 bp Feature: domain Description: COG3462 Location: 2597987-2598095 bp Feature: domain Description: COG3462 Location: 2598167-2598281 bp Feature: domain Description: COG3462 Location: 25981 67-2598281 bp Feature: gene Location: 2598341-2598907 bp Feature: domain Description: DUF305 Location: 2598431-2598644 bp Feature: domain Description: DUF305 Location: 2598431 -2598644 bp Feature: domain Description: COG3544 Location: 2598713-2598905 bp Feature: domain Description: COG3544 Location: 259871 3-2598905 bp Feature: gene Location: 2599266-2600372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2599431-2600052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2599431 -2600052 bp Feature: domain Description: GIIM Note: maturase Location: 2600097-2600289 bp Feature: domain Description: GIIM Note: maturase Location: 2600097-2600289 bp Feature: gene Location: 2601233-2602219 bp Feature: domain Description: MDR_yhdh_yhfp Location: 2601251-2602217 bp Feature: domain Description: MDR_yhdh_yhfp Location: 2601 251 -260221 7 bp Feature: gene Location: 2602277-2603296 bp Feature: domain Description: YeiH Location: 2602289-2603285 bp Feature: domain Description: YeiH Location: 2602289-2603285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pcrA (TIGR01073), GIY-YIG_COG1833 (cd10441), ligA (PRK14351), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YydB (COG5293), AAA_15 (pfam13175), RVT-Retrons, TrmL (COG0219)
PG_binding_1 (pfam01471), NlpD (COG0739), GIIM (pfam08388), PBP1_ABC_uncharacterized_transporter, PpiB (COG0652), FeoB (COG0370), FeoA (smart00899), leuS (PRK12300), RsfS (pfam02410), COG3462 (Uncharacterized membrane protein )
DUF305 (pfam03713), COG3544 (Uncharacterized conserved protein, DUF305 family ), MDR_yhdh_yhfp (cd05280), YeiH (COG2855)