myRT

myRT report for GCA_003055445.1_ASM305544v1

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Seq: QBEE01000018.1 Pseudomonas aeruginosa strain HIAE_PA18 18c, whole genome shotgun sequence (149351 bp)
Overview 1 RT 1: 200-6444 bp Neighborhood of RT #1 [200, 6731] RVT-UG5 nitrilase COG4127 restrict_AAA_1 restrict_AAA_1 Feature: gene Location: 200-2680 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 203-632 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 203-632 bp Feature: domain Description: nitrilase Location: 1994-2576 bp Feature: domain Description: nitrilase Location: 1 994-2576 bp Feature: gene Location: 3050-4042 bp Feature: domain Description: COG4127 Location: 3056-4031 bp Feature: domain Description: COG41 27 Location: 3056-4031 bp Feature: gene Location: 4980-6731 bp Feature: domain Description: restrict_AAA_1 Location: 4983-5730 bp Feature: domain Description: restrict_AAA_1 Location: 4983-5730 bp Feature: domain Description: restrict_AAA_1 Location: 6057-6444 bp Feature: domain Description: restrict_AAA_1 Location: 6057-6444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), restrict_AAA_1 (TIGR04435)

Seq: QBEE01000054.1 Pseudomonas aeruginosa strain HIAE_PA18 54c, whole genome shotgun sequence (2421 bp)
Overview 1 RT 1: 86-2418 bp Neighborhood of RT #1 [86, 2418] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 86-1804 bp Feature: domain Description: RVT_N Location: 143-380 bp Feature: domain Description: RVT_N Location: 143-380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-1082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-1082 bp Feature: domain Description: GIIM Note: maturase Location: 1136-1367 bp Feature: domain Description: GIIM Note: maturase Location: 1136-1367 bp Feature: domain Description: HNHc Note: nucleases Location: 1601-1757 bp Feature: domain Description: HNHc Note: nucleases Location: 1601-1757 bp Feature: gene Location: 2074-2202 bp Feature: gene Location: 2233-2418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: QBEE01000009.1 Pseudomonas aeruginosa strain HIAE_PA18 9c, whole genome shotgun sequence (233305 bp)
Overview 1 RT 1: 133413-144660 bp 2 RT 2: 160919-169741 bp Neighborhood of RT #1 [133413, 144662] NERD zf-C4_Topoisom COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [160919, 169770] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 133413-134183 bp Feature: domain Description: NERD Location: 133512-133845 bp Feature: domain Description: NERD Location: 13 3 512-13 3 845 bp Feature: domain Description: zf-C4_Topoisom Location: 134064-134178 bp Feature: domain Description: zf-C4_Topoisom Location: 13 4064-13 4178 bp Feature: gene Location: 134355-135476 bp Feature: domain Description: COG3177 Location: 134373-135465 bp Feature: domain Description: COG3 177 Location: 13 43 73 -13 5465 bp Feature: gene Location: 136199-137884 bp Feature: domain Description: RVT_N Location: 136256-136496 bp Feature: domain Description: RVT_N Location: 13 6256-13 6496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136544-137180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 6544-13 7180 bp Feature: domain Description: GIIM Note: maturase Location: 137234-137465 bp Feature: domain Description: GIIM Note: maturase Location: 13 723 4-13 7465 bp Feature: domain Description: HNH Note: nucleases Location: 137717-137855 bp Feature: domain Description: HNH Note: nucleases Location: 13 7717-13 7855 bp Feature: gene Location: 138965-142702 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 139073-139730 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 13 9073 -13 973 0 bp Feature: domain Description: PRK09776 Location: 139943-140414 bp Feature: domain Description: PRK09776 Location: 13 9943 -140414 bp Feature: domain Description: PAS Location: 140471-140996 bp Feature: domain Description: PAS Location: 140471-140996 bp Feature: domain Description: PRK10060 Location: 141008-142652 bp Feature: domain Description: PRK10060 Location: 141008-142652 bp Feature: gene Location: 142809-144662 bp Feature: domain Description: PRK05658 Location: 142821-144660 bp Feature: domain Description: PRK05658 Location: 142821-144660 bp Feature: gene Location: 160919-162133 bp Feature: domain Description: PRK10770 Location: 160931-162125 bp Feature: domain Description: PRK10770 Location: 16093 1-162125 bp Feature: gene Location: 162192-164966 bp Feature: domain Description: LptD Location: 162387-164952 bp Feature: domain Description: LptD Location: 1623 87-164952 bp Feature: gene Location: 165099-166811 bp Feature: domain Description: RVT_N Location: 165156-165399 bp Feature: domain Description: RVT_N Location: 165156-1653 99 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165444-166080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165444-166080 bp Feature: domain Description: YkfC Location: 166290-166440 bp Feature: domain Description: YkfC Location: 166290-166440 bp Feature: domain Description: HNH Note: nucleases Location: 166617-166755 bp Feature: domain Description: HNH Note: nucleases Location: 166617-166755 bp Feature: gene Location: 168083-169099 bp Feature: domain Description: COG3178 Location: 168086-169085 bp Feature: domain Description: COG3 178 Location: 168086-169085 bp Feature: gene Location: 169096-169770 bp Feature: domain Description: NTP_transferase_like_1 Location: 169102-169741 bp Feature: domain Description: NTP_transferase_like_1 Location: 169102-169741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), zf-C4_Topoisom (pfam01396), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)