myRT

myRT report for GCA_003057445.1_ASM305744v1

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Seq: PXIA01000021.1 Escherichia coli strain ECM-2 NODE_21_length_76434_cov_27.8606, whole genome shotgun sequence (76434 bp)
Overview 1 RT 1: 47995-52278 bp Neighborhood of RT #1 [47995, 52286] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 47995-48900 bp Feature: gene Location: 49038-49229 bp Feature: gene Location: 49386-49925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49716-49794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4971 6-49794 bp Feature: gene Location: 49953-50474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49959-50241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49959-50241 bp Feature: domain Description: GIIM Note: maturase Location: 50289-50469 bp Feature: domain Description: GIIM Note: maturase Location: 50289-50469 bp Feature: gene Location: 50796-50984 bp Feature: gene Location: 51024-52286 bp Feature: domain Description: YesM Location: 51537-52278 bp Feature: domain Description: YesM Location: 51 537-52278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: PXIA01000027.1 Escherichia coli strain ECM-2 NODE_27_length_56694_cov_24.8716, whole genome shotgun sequence (56694 bp)
Overview 1 RT 1: 21449-27480 bp Neighborhood of RT #1 [21449, 27480] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 21449-22369 bp Feature: domain Description: AbiEii Location: 21491-22232 bp Feature: domain Description: AbiEii Location: 2 1491-2 2 2 32 bp Feature: gene Location: 22356-23159 bp Feature: domain Description: AbiEi_3_N Location: 22389-22650 bp Feature: domain Description: AbiEi_3_N Location: 2 2 389-2 2 650 bp Feature: domain Description: AbiEi_3 Location: 22662-23118 bp Feature: domain Description: AbiEi_3 Location: 2 2 662 -2 3118 bp Feature: gene Location: 23454-26663 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23982-24471 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 3982 -2 4471 bp Feature: domain Description: nitrilase Location: 25977-26574 bp Feature: domain Description: nitrilase Location: 2 5977-2 6574 bp Feature: gene Location: 26824-26964 bp Feature: domain Description: Phage_ASH Location: 26851-26944 bp Feature: domain Description: Phage_ASH Location: 2 6851-2 6944 bp Feature: gene Location: 27010-27480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: PXIA01000002.1 Escherichia coli strain ECM-2 NODE_2_length_374230_cov_25.1297, whole genome shotgun sequence (374230 bp)
Overview 1 RT 1: 244163-247489 bp Neighborhood of RT #1 [244163, 247489] HTH_XRE RVT-Retrons FRG Feature: gene Location: 244163-244555 bp Feature: gene Location: 244592-244912 bp Feature: domain Description: HTH_XRE Location: 244607-244766 bp Feature: domain Description: HTH_XRE Location: 244607-244766 bp Feature: gene Location: 244878-245828 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 245058-245601 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 245058-245601 bp Feature: gene Location: 245937-247301 bp Feature: domain Description: FRG Location: 246504-246789 bp Feature: domain Description: FRG Location: 246504-246789 bp Feature: gene Location: 247349-247489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, FRG (smart00901)

Seq: PXIA01000054.1 Escherichia coli strain ECM-2 NODE_54_length_12748_cov_43.3295, whole genome shotgun sequence (12748 bp)
Overview 1 RT 1: 3-1077 bp Neighborhood of RT #1 [3, 1085] RVT-GII PRK10173 PRK10173 Feature: gene Location: 3-302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-14 1 bp Feature: gene Location: 341-652 bp Feature: domain Description: PRK10173 Location: 344-563 bp Feature: domain Description: PRK10173 Location: 34 4 -563 bp Feature: gene Location: 636-1085 bp Feature: domain Description: PRK10173 Location: 639-1077 bp Feature: domain Description: PRK10173 Location: 639-1077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: PXIA01000055.1 Escherichia coli strain ECM-2 NODE_55_length_12741_cov_44.9114, whole genome shotgun sequence (12741 bp)
Overview 1 RT 1: 4928-9268 bp Neighborhood of RT #1 [4928, 9273] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 4928-5134 bp Feature: gene Location: 5297-5632 bp Feature: gene Location: 6429-8330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6696-7527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6696-75 27 bp Feature: domain Description: Intron_maturas2 Location: 7641-7899 bp Feature: domain Description: Intron_maturas2 Location: 7641-7899 bp Feature: domain Description: HNHc Note: nucleases Location: 8073-8235 bp Feature: domain Description: HNHc Note: nucleases Location: 8073-8235 bp Feature: gene Location: 8525-8977 bp Feature: domain Description: PRK13732 Location: 8531-8975 bp Feature: domain Description: PRK13732 Location: 85 31-8975 bp Feature: gene Location: 9040-9273 bp Feature: domain Description: DUF905 Location: 9070-9268 bp Feature: domain Description: DUF905 Location: 9070-9268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: PXIA01000092.1 Escherichia coli strain ECM-2 NODE_92_length_1915_cov_53.2841, whole genome shotgun sequence (1915 bp)
Overview 1 RT 1: 121-1668 bp Neighborhood of RT #1 [121, 1913] PHA02517 RVT-GII GIIM Feature: gene Location: 121-477 bp Feature: domain Description: PHA02517 Location: 124-433 bp Feature: domain Description: PHA02517 Location: 124-433 bp Feature: gene Location: 594-1913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 663-1395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 6 3-1395 bp Feature: domain Description: GIIM Note: maturase Location: 1470-1668 bp Feature: domain Description: GIIM Note: maturase Location: 1470-16 6 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: PXIA01000096.1 Escherichia coli strain ECM-2 NODE_96_length_1678_cov_99.891, whole genome shotgun sequence (1678 bp)
Overview 1 RT 1: 3-1673 bp Neighborhood of RT #1 [3, 1675] RVT-GII InsE Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27 6-330 bp Feature: gene Location: 960-1178 bp Feature: gene Location: 1400-1675 bp Feature: domain Description: InsE Location: 1442-1673 bp Feature: domain Description: InsE Location: 1442-167 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsE (COG2963)