myRT

myRT report for GCA_003058055.1_ASM305805v1

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Seq: QBTZ01000001.1 Acidovorax sp. 107 Ga0213547_11, whole genome shotgun sequence (4921672 bp)
Overview 1 RT 1: 1431763-1438517 bp 2 RT 2: 4246682-4252666 bp Neighborhood of RT #1 [1431763, 1438621] PRK13222 PRK09692 RVT-Retrons COG4584 COG4584 IstB_IS21 Neighborhood of RT #2 [4246682, 4252692] ubiB SLC5sbd_CHT RVT_N RVT-GII GIIM HNHc COG2331 COG2928 Feature: gene Location: 1431763-1432437 bp Feature: domain Description: PRK13222 Location: 1431781-1432432 bp Feature: domain Description: PRK1 3222 Location: 1 431 781 -1 432432 bp Feature: gene Location: 1433055-1434314 bp Feature: domain Description: PRK09692 Location: 1433097-1434264 bp Feature: domain Description: PRK09692 Location: 1 433097-1 434264 bp Feature: gene Location: 1434715-1435581 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1434721-1435285 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 434721 -1 435285 bp Feature: gene Location: 1436302-1437828 bp Feature: domain Description: COG4584 Location: 1436350-1436479 bp Feature: domain Description: COG4584 Location: 1 436350-1 436479 bp Feature: domain Description: COG4584 Location: 1436728-1437142 bp Feature: domain Description: COG4584 Location: 1 436728-1 4371 42 bp Feature: gene Location: 1437818-1438621 bp Feature: domain Description: IstB_IS21 Location: 1437992-1438517 bp Feature: domain Description: IstB_IS21 Location: 1 437992-1 43851 7 bp Feature: gene Location: 4246682-4247236 bp Feature: domain Description: ubiB Location: 4246685-4247219 bp Feature: domain Description: ubiB Location: 4246685-424721 9 bp Feature: gene Location: 4247334-4248779 bp Feature: domain Description: SLC5sbd_CHT Location: 4247346-4248732 bp Feature: domain Description: SLC5sbd_CHT Location: 4247346-4248732 bp Feature: gene Location: 4249850-4251580 bp Feature: RT Description: RVT_N Location: 4249910-4250153 bp Feature: RT Description: RVT_N Location: 424991 0-42501 53 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4250201-4250849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4250201 -4250849 bp Feature: domain Description: GIIM Note: maturase Location: 4250900-4251134 bp Feature: domain Description: GIIM Note: maturase Location: 4250900-4251 1 34 bp Feature: domain Description: HNHc Note: nucleases Location: 4251371-4251512 bp Feature: domain Description: HNHc Note: nucleases Location: 4251 371 -4251 51 2 bp Feature: gene Location: 4251722-4252063 bp Feature: domain Description: COG2331 Location: 4251725-4251947 bp Feature: domain Description: COG2331 Location: 4251 725-4251 947 bp Feature: gene Location: 4252072-4252692 bp Feature: domain Description: COG2928 Location: 4252078-4252666 bp Feature: domain Description: COG2928 Location: 4252078-4252666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13222 (N-acetylmuramic acid 6-phosphate phosphatase MupP), PRK09692 (Integrase; provisional), RVT-Retrons, COG4584 (Transposase ), IstB_IS21 (pfam01695), ubiB (PRK04750), SLC5sbd_CHT (cd11474), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)
HNHc (smart00507), COG2331 (Predicted nucleic acid-binding protein, contains Zn-ribbon domain ), COG2928 (Uncharacterized membrane protein )