myRT

myRT report for GCA_003060125.1_ASM306012v1

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Seq: QBRX01000073.1 Escherichia coli strain MKU-A1X-MCR plasmid unnamed11 NODE_73_length_3137_cov_2839.938117, whole genome shotgun sequence (3137 bp)
Overview 1 RT 1: 873-3134 bp Neighborhood of RT #1 [873, 3134] RVT-Retrons CspC Feature: gene Location: 873-1028 bp Feature: gene Location: 1118-1300 bp Feature: gene Location: 1322-2461 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1466-2021 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 466-2021 bp Feature: gene Location: 2466-2669 bp Feature: domain Description: CspC Location: 2469-2664 bp Feature: domain Description: CspC Location: 2469-2664 bp Feature: gene Location: 2868-3134 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, CspC (COG1278)

Seq: QBRX01000016.1 Escherichia coli strain MKU-A1X-MCR NODE_16_length_108054_cov_47.124765, whole genome shotgun sequence (108054 bp)
Overview 1 RT 1: 93828-97643 bp Neighborhood of RT #1 [93828, 97792] InsE PHA02517 RVT-GII PRK09183 COG4584 Feature: gene Location: 93828-94154 bp Feature: domain Description: InsE Location: 93831-94152 bp Feature: domain Description: InsE Location: 93831-94152 bp Feature: gene Location: 94154-94633 bp Feature: domain Description: PHA02517 Location: 94214-94568 bp Feature: domain Description: PHA02 517 Location: 942 14-94568 bp Feature: gene Location: 95225-95947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95498-95927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95498-9592 7 bp Feature: gene Location: 95991-96770 bp Feature: domain Description: PRK09183 Location: 95997-96768 bp Feature: domain Description: PRK09183 Location: 95997-96768 bp Feature: gene Location: 96770-97792 bp Feature: domain Description: COG4584 Location: 96773-97643 bp Feature: domain Description: COG4584 Location: 96773-97643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase )

Seq: QBRX01000042.1 Escherichia coli strain MKU-A1X-MCR NODE_42_length_25936_cov_44.270078, whole genome shotgun sequence (25936 bp)
Overview 1 RT 1: 422-2969 bp Neighborhood of RT #1 [422, 2971] RVT-UG11 SmpB PRK10724 Feature: gene Location: 422-1195 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 557-1010 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 557-1010 bp Feature: gene Location: 1881-2363 bp Feature: domain Description: SmpB Location: 1911-2358 bp Feature: domain Description: SmpB Location: 1911-23 58 bp Feature: gene Location: 2495-2971 bp Feature: domain Description: PRK10724 Location: 2501-2969 bp Feature: domain Description: PRK10724 Location: 2501-2969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: QBRX01000005.1 Escherichia coli strain MKU-A1X-MCR NODE_5_length_233945_cov_44.645048, whole genome shotgun sequence (233945 bp)
Overview 1 RT 1: 226385-233074 bp Neighborhood of RT #1 [226385, 233196] XdhC PBP2_CrgA_like_5 RVT-Retrons DUF4145 Feature: gene Location: 226385-227341 bp Feature: domain Description: XdhC Location: 226463-227318 bp Feature: domain Description: XdhC Location: 2264 63-227318 bp Feature: gene Location: 227320-227730 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 227392-227704 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 227392-227704 bp Feature: gene Location: 229026-229925 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 229041-229470 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22904 1-2294 70 bp Feature: gene Location: 231269-231649 bp Feature: gene Location: 232375-233196 bp Feature: domain Description: DUF4145 Location: 232768-233074 bp Feature: domain Description: DUF4 14 5 Location: 232768-233074 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XdhC (COG1975), PBP2_CrgA_like_5 (cd08474), RVT-Retrons, DUF4145 (pfam13643)