myRT

myRT report for GCA_003061725.1_ASM306172v1

Download annotations/find similar RTs

Seq: QAHF01000020.1 Lactobacillus plantarum strain DS6_9 DS6_9_20_length_55430_cov_23.845903, whole genome shotgun sequence (55430 bp)
Overview 1 RT 1: 19838-23070 bp Neighborhood of RT #1 [19838, 23078] RVT-Retrons gpmA Feature: gene Location: 19838-19966 bp Feature: gene Location: 20119-20271 bp Feature: gene Location: 20573-21517 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20702-21248 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20702-21 248 bp Feature: gene Location: 21590-22573 bp Feature: gene Location: 22863-23078 bp Feature: domain Description: gpmA Location: 22866-23070 bp Feature: domain Description: gpmA Location: 22866-23070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, gpmA (PRK14120)

Seq: QAHF01000035.1 Lactobacillus plantarum strain DS6_9 DS6_9_35_length_16076_cov_63.449056, whole genome shotgun sequence (16076 bp)
Overview 1 RT 1: 11455-15438 bp Neighborhood of RT #1 [11455, 15438] HTH_ARSR DDE_Tnp_Tn3 RVT-GII GIIM PRK09564 Feature: gene Location: 11455-11808 bp Feature: domain Description: HTH_ARSR Location: 11515-11728 bp Feature: domain Description: HTH_ARSR Location: 11515-1172 8 bp Feature: gene Location: 12014-12355 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 12020-12287 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 12 02 0-12 2 87 bp Feature: gene Location: 12606-13421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12609-12975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 609-12 975 bp Feature: domain Description: GIIM Note: maturase Location: 13029-13257 bp Feature: domain Description: GIIM Note: maturase Location: 1302 9-132 57 bp Feature: gene Location: 13556-14920 bp Feature: domain Description: PRK09564 Location: 13571-14894 bp Feature: domain Description: PRK09564 Location: 13571-14894 bp Feature: gene Location: 15052-15438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), DDE_Tnp_Tn3 (pfam01526), RVT-GII, GIIM (pfam08388), PRK09564 (coenzyme A disulfide reductase; Reviewed)