myRT

myRT report for GCA_003061785.1_ASM306178v1

Download annotations/find similar RTs

Seq: QAHE01000016.1 Lactobacillus plantarum strain DS9_9 DS9_9_16_length_32615_cov_87.096128, whole genome shotgun sequence (32615 bp)
Overview 1 RT 1: 20818-24801 bp Neighborhood of RT #1 [20818, 24801] HTH_ARSR DDE_Tnp_Tn3 RVT-GII GIIM PRK09564 Feature: gene Location: 20818-21171 bp Feature: domain Description: HTH_ARSR Location: 20878-21091 bp Feature: domain Description: HTH_ARSR Location: 20878-21 091 bp Feature: gene Location: 21377-21718 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 21383-21650 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 21 383-21 650 bp Feature: gene Location: 21969-22784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21972-22338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 972-22338 bp Feature: domain Description: GIIM Note: maturase Location: 22392-22620 bp Feature: domain Description: GIIM Note: maturase Location: 22392-22620 bp Feature: gene Location: 22919-24283 bp Feature: domain Description: PRK09564 Location: 22934-24257 bp Feature: domain Description: PRK09564 Location: 22934-24257 bp Feature: gene Location: 24415-24801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), DDE_Tnp_Tn3 (pfam01526), RVT-GII, GIIM (pfam08388), PRK09564 (coenzyme A disulfide reductase; Reviewed)

Seq: QAHE01000007.1 Lactobacillus plantarum strain DS9_9 DS9_9_7_length_172484_cov_49.019431, whole genome shotgun sequence (172484 bp)
Overview 1 RT 1: 151144-154384 bp Neighborhood of RT #1 [151144, 154384] gpmA RVT-Retrons Feature: gene Location: 151144-151359 bp Feature: domain Description: gpmA Location: 151147-151351 bp Feature: domain Description: gpmA Location: 151147-151351 bp Feature: gene Location: 151649-152599 bp Feature: gene Location: 152705-153649 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 152834-153380 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 152 834-153380 bp Feature: gene Location: 153951-154103 bp Feature: gene Location: 154256-154384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gpmA (PRK14120), RVT-Retrons