myRT

myRT report for GCA_003064345.1_ASM306434v1

Download annotations/find similar RTs

Seq: QARP01000106.1 Salmonella enterica subsp. enterica strain CFSAN058609 SRR6919331_NODE_106, whole genome shotgun sequence (2261 bp)
Overview 1 RT 1: 348-1558 bp Neighborhood of RT #1 [348, 1558] RVT-GII PerC Feature: gene Location: 348-830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351-534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351 -534 bp Feature: gene Location: 1015-1293 bp Feature: domain Description: PerC Location: 1030-1252 bp Feature: domain Description: PerC Location: 1 030-1 252 bp Feature: gene Location: 1313-1558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PerC (pfam06069)

Seq: QARP01000112.1 Salmonella enterica subsp. enterica strain CFSAN058609 SRR6919331_NODE_112, whole genome shotgun sequence (2007 bp)
Overview 1 RT 1: 108-1338 bp Neighborhood of RT #1 [108, 1445] RVT-GII GIIM Feature: gene Location: 108-1445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 411-1044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 411-1044 bp Feature: domain Description: GIIM Note: maturase Location: 1116-1338 bp Feature: domain Description: GIIM Note: maturase Location: 1116-1338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QARP01000119.1 Salmonella enterica subsp. enterica strain CFSAN058609 SRR6919331_NODE_119, whole genome shotgun sequence (1735 bp)
Overview 1 RT 1: 101-1485 bp Neighborhood of RT #1 [101, 1485] RVT-GII Feature: gene Location: 101-1006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-980 bp Feature: gene Location: 1051-1230 bp Feature: gene Location: 1279-1485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QARP01000129.1 Salmonella enterica subsp. enterica strain CFSAN058609 SRR6919331_NODE_129, whole genome shotgun sequence (1439 bp)
Overview 1 RT 1: 116-1262 bp Neighborhood of RT #1 [116, 1363] RVT-GII GIIM Feature: gene Location: 116-1363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320-974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320-974 bp Feature: domain Description: GIIM Note: maturase Location: 1058-1262 bp Feature: domain Description: GIIM Note: maturase Location: 1058-1262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QARP01000150.1 Salmonella enterica subsp. enterica strain CFSAN058609 SRR6919331_NODE_150, whole genome shotgun sequence (742 bp)
Overview 1 RT 1: 112-628 bp Neighborhood of RT #1 [112, 663] RVT-UG4 Feature: gene Location: 112-663 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 283-628 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 283-628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4

Seq: QARP01000024.1 Salmonella enterica subsp. enterica strain CFSAN058609 SRR6919331_NODE_24, whole genome shotgun sequence (81862 bp)
Overview 1 RT 1: 54436-62388 bp Neighborhood of RT #1 [54436, 62388] GanA Transposase_20 RVT-GII GIIM Phage_int_SAM_4 INT_RitA_C_like Phage_int_SAM_1 INT_RitC_C_like RVT_N RVT-GII Feature: gene Location: 54436-56484 bp Feature: domain Description: GanA Location: 54469-56479 bp Feature: domain Description: GanA Location: 5446 9-56 479 bp Feature: gene Location: 56633-56902 bp Feature: domain Description: Transposase_20 Location: 56636-56771 bp Feature: domain Description: Transposase_20 Location: 56 6 36 -56 771 bp Feature: gene Location: 57244-57981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57274-57460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57274-5746 0 bp Feature: domain Description: GIIM Note: maturase Location: 57514-57748 bp Feature: domain Description: GIIM Note: maturase Location: 57514-57748 bp Feature: gene Location: 58036-58167 bp Feature: gene Location: 58170-59072 bp Feature: domain Description: Phage_int_SAM_4 Location: 58512-58731 bp Feature: domain Description: Phage_int_SAM_4 Location: 58512-58731 bp Feature: domain Description: INT_RitA_C_like Location: 58743-59037 bp Feature: domain Description: INT_RitA_C_like Location: 58743-59037 bp Feature: gene Location: 60039-60359 bp Feature: domain Description: Phage_int_SAM_1 Location: 60084-60327 bp Feature: domain Description: Phage_int_SAM_1 Location: 6 0084-6 0327 bp Feature: gene Location: 60439-60996 bp Feature: domain Description: INT_RitC_C_like Location: 60442-60916 bp Feature: domain Description: INT_RitC_C_like Location: 6 0442-6 0916 bp Feature: gene Location: 61046-61717 bp Feature: domain Description: RVT_N Location: 61049-61241 bp Feature: domain Description: RVT_N Location: 6 1049-6 1241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61286-61661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 1286 -6 16 6 1 bp Feature: gene Location: 61807-62094 bp Feature: gene Location: 62143-62388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GanA (COG1874), Transposase_20 (pfam02371), RVT-GII, GIIM (pfam08388), Phage_int_SAM_4 (pfam13495), INT_RitA_C_like (cd01188), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), RVT_N (pfam13655)