myRT

myRT report for GCA_003064385.1_ASM306438v1

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Seq: QARQ01000014.1 Salmonella enterica subsp. enterica strain CFSAN058607 SRR6919513_NODE_14, whole genome shotgun sequence (114766 bp)
Overview 1 RT 1: 79467-83302 bp Neighborhood of RT #1 [79467, 83302] HTH_XRE RVT_N RVT-GII YkfC HNHc PRK09738 Feature: gene Location: 79467-79754 bp Feature: gene Location: 79848-80117 bp Feature: domain Description: HTH_XRE Location: 79863-79965 bp Feature: domain Description: HTH_XRE Location: 79863-79965 bp Feature: gene Location: 80363-82036 bp Feature: domain Description: RVT_N Location: 80423-80666 bp Feature: domain Description: RVT_N Location: 80423-80666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80711-81353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8071 1 -81 353 bp Feature: domain Description: YkfC Location: 81482-81653 bp Feature: domain Description: YkfC Location: 81 482-81 653 bp Feature: domain Description: HNHc Note: nucleases Location: 81851-82013 bp Feature: domain Description: HNHc Note: nucleases Location: 81 851 -8201 3 bp Feature: gene Location: 82593-82772 bp Feature: domain Description: PRK09738 Location: 82596-82749 bp Feature: domain Description: PRK09738 Location: 82596-82749 bp Feature: gene Location: 82976-83302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), PRK09738 (small toxic polypeptide; Provisional)

Seq: QARQ01000006.1 Salmonella enterica subsp. enterica strain CFSAN058607 SRR6919513_NODE_6, whole genome shotgun sequence (307294 bp)
Overview 1 RT 1: 210222-216498 bp Neighborhood of RT #1 [210222, 216498] PRK15246 RVT-UG8 Feature: gene Location: 210222-210980 bp Feature: domain Description: PRK15246 Location: 210282-210978 bp Feature: domain Description: PRK152 46 Location: 2 102 82 -2 10978 bp Feature: gene Location: 211028-211222 bp Feature: gene Location: 211800-213818 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 212373-212826 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2 12 373-2 12 82 6 bp Feature: gene Location: 215386-215520 bp Feature: gene Location: 215737-216498 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15246 (fimbrial assembly chaperone), RVT-UG8