myRT

myRT report for GCA_003064445.1_ASM306444v1

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Seq: QARU01000028.1 Salmonella enterica subsp. enterica strain CFSAN058603 SRR6919789_NODE_28, whole genome shotgun sequence (26767 bp)
Overview 1 RT 1: 843-7273 bp Neighborhood of RT #1 [843, 7425] FimC FimD RVT_N RVT-GII YkfC HNHc PRK09738 HTH_XRE Feature: gene Location: 843-1538 bp Feature: domain Description: FimC Location: 858-1518 bp Feature: domain Description: FimC Location: 858-1 51 8 bp Feature: gene Location: 1675-3966 bp Feature: domain Description: FimD Location: 1702-3961 bp Feature: domain Description: FimD Location: 1 702-3961 bp Feature: gene Location: 4252-5925 bp Feature: RT Description: RVT_N Location: 4312-4555 bp Feature: RT Description: RVT_N Location: 431 2-4555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4600-5242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4600-5242 bp Feature: domain Description: YkfC Location: 5371-5542 bp Feature: domain Description: YkfC Location: 5371 -5542 bp Feature: domain Description: HNHc Note: nucleases Location: 5740-5902 bp Feature: domain Description: HNHc Note: nucleases Location: 5740-5902 bp Feature: gene Location: 6482-6661 bp Feature: domain Description: PRK09738 Location: 6485-6638 bp Feature: domain Description: PRK09738 Location: 6485-6638 bp Feature: gene Location: 7156-7425 bp Feature: domain Description: HTH_XRE Location: 7171-7273 bp Feature: domain Description: HTH_XRE Location: 71 71 -7273 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimD (COG3188), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), PRK09738 (small toxic polypeptide; Provisional), HTH_XRE (smart00530), FimC (COG3121)