myRT

myRT report for GCA_003064465.1_ASM306446v1

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Seq: QARV01000033.1 Salmonella enterica subsp. enterica strain CFSAN058602 SRR6919510_NODE_33, whole genome shotgun sequence (18581 bp)
Overview 1 RT 1: 11133-17695 bp Neighborhood of RT #1 [11133, 17715] HTH_XRE PRK09738 RVT_N RVT-GII YkfC HNHc FimD FimC Feature: gene Location: 11133-11402 bp Feature: domain Description: HTH_XRE Location: 11148-11250 bp Feature: domain Description: HTH_XRE Location: 1 1 1 48-1 1 250 bp Feature: gene Location: 11897-12076 bp Feature: domain Description: PRK09738 Location: 11900-12053 bp Feature: domain Description: PRK09738 Location: 1 1 900-1 2053 bp Feature: gene Location: 12633-14306 bp Feature: RT Description: RVT_N Location: 12693-12936 bp Feature: RT Description: RVT_N Location: 1 2693-1 2936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12981-13623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2981 -1 3623 bp Feature: domain Description: YkfC Location: 13752-13923 bp Feature: domain Description: YkfC Location: 1 3752-1 3923 bp Feature: domain Description: HNHc Note: nucleases Location: 14121-14283 bp Feature: domain Description: HNHc Note: nucleases Location: 1 41 21 -1 4283 bp Feature: gene Location: 14592-16883 bp Feature: domain Description: FimD Location: 14619-16878 bp Feature: domain Description: FimD Location: 1 461 9-1 6878 bp Feature: gene Location: 17020-17715 bp Feature: domain Description: FimC Location: 17035-17695 bp Feature: domain Description: FimC Location: 1 7035-1 7695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), PRK09738 (small toxic polypeptide; Provisional), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), FimD (COG3188), FimC (COG3121)