myRT

myRT report for GCA_003065085.1_ASM306508v1

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Seq: QBCE01000032.1 Klebsiella pneumoniae strain OC951 contig-13, whole genome shotgun sequence (152736 bp)
Overview 1 RT 1: 32592-39445 bp Neighborhood of RT #1 [32592, 39462] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 32592-33257 bp Feature: domain Description: INT_P4_C Location: 32697-33255 bp Feature: domain Description: INT_P4_C Location: 32697-33255 bp Feature: gene Location: 33518-33958 bp Feature: domain Description: Integrase_1 Location: 33524-33740 bp Feature: domain Description: Integrase_1 Location: 33524-33740 bp Feature: gene Location: 34015-36093 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 34423-34867 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 34423-34867 bp Feature: gene Location: 36093-38702 bp Feature: domain Description: FimD Location: 36150-38691 bp Feature: domain Description: FimD Location: 361 50-38691 bp Feature: gene Location: 38734-39462 bp Feature: domain Description: FimC Location: 38782-39445 bp Feature: domain Description: FimC Location: 38782-39445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: QBCE01000076.1 Klebsiella pneumoniae strain OC951 contig-2000032, whole genome shotgun sequence (1345 bp)
Overview 1 RT 1: 1-1329 bp Neighborhood of RT #1 [1, 1343] RVT-GII StbA Feature: gene Location: 1-966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-574 bp Feature: gene Location: 1215-1343 bp Feature: domain Description: StbA Location: 1218-1329 bp Feature: domain Description: StbA Location: 12 18-132 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, StbA (pfam06406)

Seq: QBCE01000176.1 Klebsiella pneumoniae strain OC951 contig-2000073, whole genome shotgun sequence (179846 bp)
Overview 1 RT 1: 15737-19845 bp Neighborhood of RT #1 [15737, 19847] DinI RVT-GII PRK10276 umuC Feature: gene Location: 15737-15979 bp Feature: domain Description: DinI Location: 15788-15968 bp Feature: domain Description: DinI Location: 15788-15968 bp Feature: gene Location: 15994-16140 bp Feature: gene Location: 16594-18081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16999-17689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16999-17689 bp Feature: gene Location: 18160-18579 bp Feature: domain Description: PRK10276 Location: 18163-18574 bp Feature: domain Description: PRK10276 Location: 18163 -18574 bp Feature: gene Location: 18582-19847 bp Feature: domain Description: umuC Location: 18585-19845 bp Feature: domain Description: umuC Location: 18585-19845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: QBCE01000019.1 Klebsiella pneumoniae strain OC951 contig-6, whole genome shotgun sequence (821 bp)
Overview 1 RT 1: 1-816 bp Neighborhood of RT #1 [1, 818] RVT-GII Feature: gene Location: 1-216 bp Feature: gene Location: 270-818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672-816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672-816 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QBCE01000156.1 Klebsiella pneumoniae strain OC951 contig-64, whole genome shotgun sequence (7160 bp)
Overview 1 RT 1: 3301-6842 bp Neighborhood of RT #1 [3301, 6842] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 3301-3573 bp Feature: domain Description: InsE Location: 3310-3559 bp Feature: domain Description: InsE Location: 3310-35 5 9 bp Feature: gene Location: 3629-4054 bp Feature: domain Description: PHA02517 Location: 3653-3989 bp Feature: domain Description: PHA025 17 Location: 365 3-3989 bp Feature: gene Location: 4646-6169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4919-5651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4919-5 65 1 bp Feature: domain Description: GIIM Note: maturase Location: 5726-5924 bp Feature: domain Description: GIIM Note: maturase Location: 5 726-5 924 bp Feature: gene Location: 6334-6492 bp Feature: domain Description: PHA02517 Location: 6337-6457 bp Feature: domain Description: PHA025 17 Location: 6337-645 7 bp Feature: gene Location: 6711-6842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)