myRT

myRT report for GCA_003067485.1_ASM306748v1

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Seq: QBIH01000001.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CFSAN051016 CFSAN051016_1, whole genome shotgun sequence (576487 bp)
Overview 1 RT 1: 166808-173143 bp Neighborhood of RT #1 [166808, 173145] 5 RVT-UG11 PRK10201 PRK05658 Feature: gene Location: 166808-168508 bp Feature: domain Description: 5 Location: 168032-168326 bp Feature: domain Description: 5 Location: 1 68032-1 68326 bp Feature: gene Location: 168638-168805 bp Feature: gene Location: 169445-170209 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 169568-170021 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 1 69568-1 70021 bp Feature: gene Location: 170533-171039 bp Feature: domain Description: PRK10201 Location: 170536-171034 bp Feature: domain Description: PRK1 0201 Location: 1 70536-1 71 034 bp Feature: gene Location: 171163-173145 bp Feature: domain Description: PRK05658 Location: 171301-173143 bp Feature: domain Description: PRK05658 Location: 1 71 301 -1 731 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 5 (PHA02596), RVT-UG11, PRK10201 (G/U mismatch-specific DNA glycosylase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)

Seq: QBIH01000016.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CFSAN051016 CFSAN051016_16, whole genome shotgun sequence (113857 bp)
Overview 1 RT 1: 58119-60949 bp Neighborhood of RT #1 [58119, 60960] TIR-like RVT-Retrons InsE Feature: gene Location: 58119-58643 bp Feature: domain Description: TIR-like Location: 58209-58563 bp Feature: domain Description: TIR-like Location: 582 09-58563 bp Feature: gene Location: 58582-58980 bp Feature: gene Location: 59009-59968 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59189-59711 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59189-59711 bp Feature: gene Location: 59999-60226 bp Feature: gene Location: 60658-60960 bp Feature: domain Description: InsE Location: 60667-60949 bp Feature: domain Description: InsE Location: 60667-60949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR-like (pfam10137), RVT-Retrons, InsE (COG2963)

Seq: QBIH01000002.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CFSAN051016 CFSAN051016_2, whole genome shotgun sequence (544089 bp)
Overview 1 RT 1: 353149-356663 bp Neighborhood of RT #1 [353149, 356663] DUF4156 DUF2188 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 353149-353514 bp Feature: domain Description: DUF4156 Location: 353230-353506 bp Feature: domain Description: DUF4156 Location: 3 53 23 0-3 53 506 bp Feature: gene Location: 353857-354084 bp Feature: domain Description: DUF2188 Location: 353872-354049 bp Feature: domain Description: DUF2188 Location: 3 53 872-3 54049 bp Feature: gene Location: 354233-355906 bp Feature: domain Description: RVT_N Location: 354296-354530 bp Feature: domain Description: RVT_N Location: 3 54296-3 5453 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354584-355229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 54584-3 55229 bp Feature: domain Description: GIIM Note: maturase Location: 355283-355514 bp Feature: domain Description: GIIM Note: maturase Location: 3 55283 -3 55514 bp Feature: domain Description: HNHc Note: nucleases Location: 355724-355880 bp Feature: domain Description: HNHc Note: nucleases Location: 3 55724-3 55880 bp Feature: gene Location: 356044-356280 bp Feature: gene Location: 356337-356663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4156 (pfam13698), DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)