myRT

myRT report for GCA_003067845.1_ASM306784v1

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Seq: QAPP01000011.1 Salmonella enterica subsp. enterica strain CFSAN058593 SRR6920019_NODE_11, whole genome shotgun sequence (125434 bp)
Overview 1 RT 1: 42102-45937 bp Neighborhood of RT #1 [42102, 45937] PRK09738 RVT_N RVT-GII YkfC HNHc HTH_XRE Feature: gene Location: 42102-42428 bp Feature: gene Location: 42632-42811 bp Feature: domain Description: PRK09738 Location: 42635-42788 bp Feature: domain Description: PRK09738 Location: 42635-42788 bp Feature: gene Location: 43368-45041 bp Feature: domain Description: RVT_N Location: 43428-43671 bp Feature: domain Description: RVT_N Location: 43428-43671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43716-44358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4371 6-44358 bp Feature: domain Description: YkfC Location: 44487-44658 bp Feature: domain Description: YkfC Location: 44487-44658 bp Feature: domain Description: HNHc Note: nucleases Location: 44856-45018 bp Feature: domain Description: HNHc Note: nucleases Location: 44856-4501 8 bp Feature: gene Location: 45287-45556 bp Feature: domain Description: HTH_XRE Location: 45302-45404 bp Feature: domain Description: HTH_XRE Location: 45302-45404 bp Feature: gene Location: 45650-45937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09738 (small toxic polypeptide; Provisional), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), HTH_XRE (smart00530)

Seq: QAPP01000007.1 Salmonella enterica subsp. enterica strain CFSAN058593 SRR6920019_NODE_7, whole genome shotgun sequence (339655 bp)
Overview 1 RT 1: 90126-96748 bp Neighborhood of RT #1 [90126, 96750] RVT-UG8 PRK15246 Feature: gene Location: 90126-90290 bp Feature: gene Location: 90466-91227 bp Feature: gene Location: 93154-95172 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 93727-94180 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 9372 7-94180 bp Feature: gene Location: 95711-95944 bp Feature: gene Location: 95992-96750 bp Feature: domain Description: PRK15246 Location: 96052-96748 bp Feature: domain Description: PRK152 46 Location: 96052 -96748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, PRK15246 (fimbrial assembly chaperone)