myRT

myRT report for GCA_003067855.1_ASM306785v1

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Seq: QAPN01000017.1 Salmonella enterica subsp. enterica strain CFSAN058595 SRR6920563_NODE_17, whole genome shotgun sequence (82008 bp)
Overview 1 RT 1: 42596-46431 bp Neighborhood of RT #1 [42596, 46431] HTH_XRE RVT_N RVT-GII YkfC HNHc PRK09738 Feature: gene Location: 42596-42883 bp Feature: gene Location: 42977-43246 bp Feature: domain Description: HTH_XRE Location: 42992-43094 bp Feature: domain Description: HTH_XRE Location: 42992-43094 bp Feature: gene Location: 43492-45165 bp Feature: domain Description: RVT_N Location: 43552-43795 bp Feature: domain Description: RVT_N Location: 43552-43795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43840-44482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43840-44482 bp Feature: domain Description: YkfC Location: 44611-44782 bp Feature: domain Description: YkfC Location: 4461 1 -44782 bp Feature: domain Description: HNHc Note: nucleases Location: 44980-45142 bp Feature: domain Description: HNHc Note: nucleases Location: 44980-451 42 bp Feature: gene Location: 45722-45901 bp Feature: domain Description: PRK09738 Location: 45725-45878 bp Feature: domain Description: PRK09738 Location: 45725-45878 bp Feature: gene Location: 46105-46431 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), PRK09738 (small toxic polypeptide; Provisional)

Seq: QAPN01000007.1 Salmonella enterica subsp. enterica strain CFSAN058595 SRR6920563_NODE_7, whole genome shotgun sequence (307294 bp)
Overview 1 RT 1: 210222-216498 bp Neighborhood of RT #1 [210222, 216498] PRK15246 RVT-UG8 Feature: gene Location: 210222-210980 bp Feature: domain Description: PRK15246 Location: 210282-210978 bp Feature: domain Description: PRK152 46 Location: 2 102 82 -2 10978 bp Feature: gene Location: 211028-211222 bp Feature: gene Location: 211800-213818 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 212373-212826 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2 12 373-2 12 82 6 bp Feature: gene Location: 215386-215520 bp Feature: gene Location: 215737-216498 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15246 (fimbrial assembly chaperone), RVT-UG8