myRT

myRT report for GCA_003067925.1_ASM306792v1

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Seq: QAPR01000014.1 Salmonella enterica subsp. enterica strain CFSAN058591 SRR6921325_NODE_14, whole genome shotgun sequence (83243 bp)
Overview 1 RT 1: 19004-22839 bp Neighborhood of RT #1 [19004, 22839] PRK09738 RVT_N RVT-GII YkfC HNHc HTH_XRE Feature: gene Location: 19004-19330 bp Feature: gene Location: 19534-19713 bp Feature: domain Description: PRK09738 Location: 19537-19690 bp Feature: domain Description: PRK09738 Location: 1 9537-1 9690 bp Feature: gene Location: 20270-21943 bp Feature: domain Description: RVT_N Location: 20330-20573 bp Feature: domain Description: RVT_N Location: 20330-20573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20618-21260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2061 8-21 260 bp Feature: domain Description: YkfC Location: 21389-21560 bp Feature: domain Description: YkfC Location: 21 389-21 560 bp Feature: domain Description: HNHc Note: nucleases Location: 21758-21920 bp Feature: domain Description: HNHc Note: nucleases Location: 21 758-21 920 bp Feature: gene Location: 22189-22458 bp Feature: domain Description: HTH_XRE Location: 22204-22306 bp Feature: domain Description: HTH_XRE Location: 22204-22306 bp Feature: gene Location: 22552-22839 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09738 (small toxic polypeptide; Provisional), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), HTH_XRE (smart00530)

Seq: QAPR01000007.1 Salmonella enterica subsp. enterica strain CFSAN058591 SRR6921325_NODE_7, whole genome shotgun sequence (347441 bp)
Overview 1 RT 1: 250692-256976 bp Neighborhood of RT #1 [250692, 256976] PRK15246 RVT-UG8 Feature: gene Location: 250692-251450 bp Feature: domain Description: PRK15246 Location: 250752-251448 bp Feature: domain Description: PRK152 46 Location: 2 50752 -2 51448 bp Feature: gene Location: 251498-251692 bp Feature: gene Location: 252270-254288 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 252843-253296 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2 52 843-2 532 96 bp Feature: gene Location: 255864-255998 bp Feature: gene Location: 256215-256976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15246 (fimbrial assembly chaperone), RVT-UG8