myRT

myRT report for GCA_003067945.1_ASM306794v1

Download annotations/find similar RTs

Seq: QAPS01000013.1 Salmonella enterica subsp. enterica strain CFSAN058590 SRR6919735_NODE_13, whole genome shotgun sequence (104087 bp)
Overview 1 RT 1: 19058-22893 bp Neighborhood of RT #1 [19058, 22893] PRK09738 RVT_N RVT-GII YkfC HNHc HTH_XRE Feature: gene Location: 19058-19384 bp Feature: gene Location: 19588-19767 bp Feature: domain Description: PRK09738 Location: 19591-19744 bp Feature: domain Description: PRK09738 Location: 1 9591 -1 9744 bp Feature: gene Location: 20324-21997 bp Feature: domain Description: RVT_N Location: 20384-20627 bp Feature: domain Description: RVT_N Location: 20384-20627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20672-21314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20672-21 31 4 bp Feature: domain Description: YkfC Location: 21443-21614 bp Feature: domain Description: YkfC Location: 21 443-21 61 4 bp Feature: domain Description: HNHc Note: nucleases Location: 21812-21974 bp Feature: domain Description: HNHc Note: nucleases Location: 21 81 2-21 974 bp Feature: gene Location: 22243-22512 bp Feature: domain Description: HTH_XRE Location: 22258-22360 bp Feature: domain Description: HTH_XRE Location: 22258-22360 bp Feature: gene Location: 22606-22893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09738 (small toxic polypeptide; Provisional), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), HTH_XRE (smart00530)

Seq: QAPS01000002.1 Salmonella enterica subsp. enterica strain CFSAN058590 SRR6919735_NODE_2, whole genome shotgun sequence (525902 bp)
Overview 1 RT 1: 90458-97080 bp Neighborhood of RT #1 [90458, 97082] RVT-UG8 PRK15246 Feature: gene Location: 90458-90622 bp Feature: gene Location: 90798-91559 bp Feature: gene Location: 93486-95504 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 94059-94512 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 94059-94512 bp Feature: gene Location: 96043-96276 bp Feature: gene Location: 96324-97082 bp Feature: domain Description: PRK15246 Location: 96384-97080 bp Feature: domain Description: PRK152 46 Location: 96384-97080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, PRK15246 (fimbrial assembly chaperone)