myRT

myRT report for GCA_003068025.1_ASM306802v1

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Seq: QAPW01000011.1 Salmonella enterica subsp. enterica strain CFSAN058545 SRR6919320_NODE_11, whole genome shotgun sequence (103041 bp)
Overview 1 RT 1: 19034-22869 bp Neighborhood of RT #1 [19034, 22869] PRK09738 RVT_N RVT-GII YkfC HNHc HTH_XRE Feature: gene Location: 19034-19360 bp Feature: gene Location: 19564-19743 bp Feature: domain Description: PRK09738 Location: 19567-19720 bp Feature: domain Description: PRK09738 Location: 1 9567-1 9720 bp Feature: gene Location: 20300-21973 bp Feature: domain Description: RVT_N Location: 20360-20603 bp Feature: domain Description: RVT_N Location: 20360-20603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20648-21290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20648-21 290 bp Feature: domain Description: YkfC Location: 21419-21590 bp Feature: domain Description: YkfC Location: 21 41 9-21 590 bp Feature: domain Description: HNHc Note: nucleases Location: 21788-21950 bp Feature: domain Description: HNHc Note: nucleases Location: 21 788-21 950 bp Feature: gene Location: 22219-22488 bp Feature: domain Description: HTH_XRE Location: 22234-22336 bp Feature: domain Description: HTH_XRE Location: 22234-22336 bp Feature: gene Location: 22582-22869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09738 (small toxic polypeptide; Provisional), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), HTH_XRE (smart00530)

Seq: QAPW01000003.1 Salmonella enterica subsp. enterica strain CFSAN058545 SRR6919320_NODE_3, whole genome shotgun sequence (721124 bp)
Overview 1 RT 1: 90135-96758 bp Neighborhood of RT #1 [90135, 96760] RVT-UG8 PRK15246 Feature: gene Location: 90135-90299 bp Feature: gene Location: 90475-91236 bp Feature: gene Location: 93164-95182 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 93737-94190 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 93737-94190 bp Feature: gene Location: 95721-95954 bp Feature: gene Location: 96002-96760 bp Feature: domain Description: PRK15246 Location: 96062-96758 bp Feature: domain Description: PRK152 46 Location: 96062 -96758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, PRK15246 (fimbrial assembly chaperone)