myRT

myRT report for GCA_003068045.1_ASM306804v1

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Seq: QAPX01000015.1 Salmonella enterica subsp. enterica strain CFSAN058544 SRR6919307_NODE_15, whole genome shotgun sequence (103041 bp)
Overview 1 RT 1: 19034-22869 bp Neighborhood of RT #1 [19034, 22869] PRK09738 RVT_N RVT-GII YkfC HNHc HTH_XRE Feature: gene Location: 19034-19360 bp Feature: gene Location: 19564-19743 bp Feature: domain Description: PRK09738 Location: 19567-19720 bp Feature: domain Description: PRK09738 Location: 1 9567-1 9720 bp Feature: gene Location: 20300-21973 bp Feature: domain Description: RVT_N Location: 20360-20603 bp Feature: domain Description: RVT_N Location: 20360-20603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20648-21290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20648-21 290 bp Feature: domain Description: YkfC Location: 21419-21590 bp Feature: domain Description: YkfC Location: 21 41 9-21 590 bp Feature: domain Description: HNHc Note: nucleases Location: 21788-21950 bp Feature: domain Description: HNHc Note: nucleases Location: 21 788-21 950 bp Feature: gene Location: 22219-22488 bp Feature: domain Description: HTH_XRE Location: 22234-22336 bp Feature: domain Description: HTH_XRE Location: 22234-22336 bp Feature: gene Location: 22582-22869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09738 (small toxic polypeptide; Provisional), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), HTH_XRE (smart00530)

Seq: QAPX01000007.1 Salmonella enterica subsp. enterica strain CFSAN058544 SRR6919307_NODE_7, whole genome shotgun sequence (265069 bp)
Overview 1 RT 1: 167987-174272 bp Neighborhood of RT #1 [167987, 174272] PRK15246 RVT-UG8 Feature: gene Location: 167987-168745 bp Feature: domain Description: PRK15246 Location: 168047-168743 bp Feature: domain Description: PRK152 46 Location: 168047-168743 bp Feature: gene Location: 168793-168987 bp Feature: gene Location: 169565-171583 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 170138-170591 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 170138-170591 bp Feature: gene Location: 173160-173294 bp Feature: gene Location: 173511-174272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15246 (fimbrial assembly chaperone), RVT-UG8