myRT

myRT report for GCA_003068125.1_ASM306812v1

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Seq: QAQA01000017.1 Salmonella enterica subsp. enterica strain CFSAN058541 SRR6919761_NODE_17, whole genome shotgun sequence (109824 bp)
Overview 1 RT 1: 83900-90330 bp Neighborhood of RT #1 [83900, 90482] FimC FimD RVT_N RVT-GII YkfC HNHc PRK09738 HTH_XRE Feature: gene Location: 83900-84595 bp Feature: domain Description: FimC Location: 83915-84575 bp Feature: domain Description: FimC Location: 8391 5-84575 bp Feature: gene Location: 84732-87023 bp Feature: domain Description: FimD Location: 84759-87018 bp Feature: domain Description: FimD Location: 84759-8701 8 bp Feature: gene Location: 87309-88982 bp Feature: RT Description: RVT_N Location: 87369-87612 bp Feature: RT Description: RVT_N Location: 87369-8761 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87657-88299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87657-88299 bp Feature: domain Description: YkfC Location: 88428-88599 bp Feature: domain Description: YkfC Location: 88428-88599 bp Feature: domain Description: HNHc Note: nucleases Location: 88797-88959 bp Feature: domain Description: HNHc Note: nucleases Location: 88797-88959 bp Feature: gene Location: 89539-89718 bp Feature: domain Description: PRK09738 Location: 89542-89695 bp Feature: domain Description: PRK09738 Location: 89542-89695 bp Feature: gene Location: 90213-90482 bp Feature: domain Description: HTH_XRE Location: 90228-90330 bp Feature: domain Description: HTH_XRE Location: 90228-90330 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), PRK09738 (small toxic polypeptide; Provisional), HTH_XRE (smart00530)