myRT

myRT report for GCA_003068585.1_ASM306858v1

Download annotations/find similar RTs

Seq: QAQZ01000020.1 Salmonella enterica subsp. enterica strain CFSAN058494 SRR6921402_NODE_20, whole genome shotgun sequence (78213 bp)
Overview 1 RT 1: 19343-25905 bp Neighborhood of RT #1 [19343, 25925] HTH_XRE PRK09738 RVT_N RVT-GII YkfC HNHc FimD FimC Feature: gene Location: 19343-19612 bp Feature: domain Description: HTH_XRE Location: 19358-19460 bp Feature: domain Description: HTH_XRE Location: 1 9358-1 9460 bp Feature: gene Location: 20107-20286 bp Feature: domain Description: PRK09738 Location: 20110-20263 bp Feature: domain Description: PRK09738 Location: 201 1 0-20263 bp Feature: gene Location: 20843-22516 bp Feature: RT Description: RVT_N Location: 20903-21146 bp Feature: RT Description: RVT_N Location: 20903-21 1 46 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21191-21833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 91 -21 833 bp Feature: domain Description: YkfC Location: 21962-22133 bp Feature: domain Description: YkfC Location: 21 962-221 33 bp Feature: domain Description: HNHc Note: nucleases Location: 22331-22493 bp Feature: domain Description: HNHc Note: nucleases Location: 22331 -22493 bp Feature: gene Location: 22802-25093 bp Feature: domain Description: FimD Location: 22829-25088 bp Feature: domain Description: FimD Location: 22829-25088 bp Feature: gene Location: 25230-25925 bp Feature: domain Description: FimC Location: 25245-25905 bp Feature: domain Description: FimC Location: 25245-25905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), PRK09738 (small toxic polypeptide; Provisional), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), FimD (COG3188), FimC (COG3121)