myRT

myRT report for GCA_003068885.1_ASM306888v1

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Seq: QBJP01000013.1 Salmonella enterica subsp. enterica strain CFSAN058577 CFSAN058577_13, whole genome shotgun sequence (103067 bp)
Overview 1 RT 1: 80175-84010 bp Neighborhood of RT #1 [80175, 84010] HTH_XRE RVT_N RVT-GII YkfC HNHc PRK09738 Feature: gene Location: 80175-80462 bp Feature: gene Location: 80556-80825 bp Feature: domain Description: HTH_XRE Location: 80571-80673 bp Feature: domain Description: HTH_XRE Location: 80571 -80673 bp Feature: gene Location: 81071-82744 bp Feature: domain Description: RVT_N Location: 81131-81374 bp Feature: domain Description: RVT_N Location: 81 1 31 -81 374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81419-82061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 41 9-82061 bp Feature: domain Description: YkfC Location: 82190-82361 bp Feature: domain Description: YkfC Location: 821 90-82361 bp Feature: domain Description: HNHc Note: nucleases Location: 82559-82721 bp Feature: domain Description: HNHc Note: nucleases Location: 82559-82721 bp Feature: gene Location: 83301-83480 bp Feature: domain Description: PRK09738 Location: 83304-83457 bp Feature: domain Description: PRK09738 Location: 83304-83457 bp Feature: gene Location: 83684-84010 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), PRK09738 (small toxic polypeptide; Provisional)

Seq: QBJP01000007.1 Salmonella enterica subsp. enterica strain CFSAN058577 CFSAN058577_7, whole genome shotgun sequence (343279 bp)
Overview 1 RT 1: 90458-97080 bp Neighborhood of RT #1 [90458, 97082] RVT-UG8 PRK15246 Feature: gene Location: 90458-90622 bp Feature: gene Location: 90798-91559 bp Feature: gene Location: 93486-95504 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 94059-94512 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 94059-94512 bp Feature: gene Location: 96043-96276 bp Feature: gene Location: 96324-97082 bp Feature: domain Description: PRK15246 Location: 96384-97080 bp Feature: domain Description: PRK152 46 Location: 96384-97080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, PRK15246 (fimbrial assembly chaperone)