myRT

myRT report for GCA_003069185.1_ASM306918v1

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Seq: QBJM01000014.1 Salmonella enterica subsp. enterica strain CFSAN058580 CFSAN058580_14, whole genome shotgun sequence (83362 bp)
Overview 1 RT 1: 60470-64305 bp Neighborhood of RT #1 [60470, 64305] HTH_XRE RVT_N RVT-GII YkfC HNHc PRK09738 Feature: gene Location: 60470-60757 bp Feature: gene Location: 60851-61120 bp Feature: domain Description: HTH_XRE Location: 60866-60968 bp Feature: domain Description: HTH_XRE Location: 60866-60968 bp Feature: gene Location: 61366-63039 bp Feature: domain Description: RVT_N Location: 61426-61669 bp Feature: domain Description: RVT_N Location: 61 426-61 669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61714-62356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 71 4-62356 bp Feature: domain Description: YkfC Location: 62485-62656 bp Feature: domain Description: YkfC Location: 62485-62656 bp Feature: domain Description: HNHc Note: nucleases Location: 62854-63016 bp Feature: domain Description: HNHc Note: nucleases Location: 62854-6301 6 bp Feature: gene Location: 63596-63775 bp Feature: domain Description: PRK09738 Location: 63599-63752 bp Feature: domain Description: PRK09738 Location: 63599-63752 bp Feature: gene Location: 63979-64305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), PRK09738 (small toxic polypeptide; Provisional)

Seq: QBJM01000002.1 Salmonella enterica subsp. enterica strain CFSAN058580 CFSAN058580_2, whole genome shotgun sequence (721439 bp)
Overview 1 RT 1: 624358-630642 bp Neighborhood of RT #1 [624358, 630642] PRK15246 RVT-UG8 Feature: gene Location: 624358-625116 bp Feature: domain Description: PRK15246 Location: 624418-625114 bp Feature: domain Description: PRK152 46 Location: 62 4418-62 5114 bp Feature: gene Location: 625164-625358 bp Feature: gene Location: 625936-627954 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 626509-626962 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 62 6509-62 6962 bp Feature: gene Location: 629530-629664 bp Feature: gene Location: 629881-630642 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15246 (fimbrial assembly chaperone), RVT-UG8