myRT

myRT report for GCA_003070805.1_ASM307080v1

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Seq: QBLQ01000017.1 Halanaerobium sp. isolate 6-U2 scaffold_17, whole genome shotgun sequence (42386 bp)
Overview 1 RT 1: 38312-42385 bp Neighborhood of RT #1 [38312, 42384] GIY-YIG_COG1833 pcrA RVT-GII Intron_maturas2 HNHc pcrA Feature: gene Location: 38312-38755 bp Feature: domain Description: GIY-YIG_COG1833 Location: 38336-38666 bp Feature: domain Description: GIY-YIG_COG1 833 Location: 38336-38666 bp Feature: gene Location: 38786-39559 bp Feature: domain Description: pcrA Location: 38807-39548 bp Feature: domain Description: pcrA Location: 38807-39548 bp Feature: gene Location: 40148-41992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40412-41249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4041 2-41 249 bp Feature: domain Description: Intron_maturas2 Location: 41318-41684 bp Feature: domain Description: Intron_maturas2 Location: 41 31 8-41 684 bp Feature: domain Description: HNHc Note: nucleases Location: 41804-41963 bp Feature: domain Description: HNHc Note: nucleases Location: 41 804-41 963 bp Feature: gene Location: 42184-42384 bp Feature: domain Description: pcrA Location: 42187-42385 bp Feature: domain Description: pcrA Location: 421 87-42385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIY-YIG_COG1833 (cd10441), pcrA (TIGR01073), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QBLQ01000062.1 Halanaerobium sp. isolate 6-U2 scaffold_67, whole genome shotgun sequence (16230 bp)
Overview 1 RT 1: 1-4834 bp Neighborhood of RT #1 [1, 4842] RVT-GII GIIM AAA_15 TOPRIM_OLD UvrD UvrD UvrD Feature: gene Location: 1-1134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55-676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55-676 bp Feature: domain Description: GIIM Note: maturase Location: 721-913 bp Feature: domain Description: GIIM Note: maturase Location: 72 1-913 bp Feature: gene Location: 1145-3205 bp Feature: domain Description: AAA_15 Location: 1169-2336 bp Feature: domain Description: AAA_15 Location: 1169-2 336 bp Feature: domain Description: TOPRIM_OLD Location: 2483-2765 bp Feature: domain Description: TOPRIM_OLD Location: 2 483-2 765 bp Feature: gene Location: 3190-4842 bp Feature: domain Description: UvrD Location: 3286-3568 bp Feature: domain Description: UvrD Location: 32 86-3568 bp Feature: domain Description: UvrD Location: 3589-4021 bp Feature: domain Description: UvrD Location: 3589-402 1 bp Feature: domain Description: UvrD Location: 4162-4834 bp Feature: domain Description: UvrD Location: 4162 -4834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), AAA_15 (pfam13175), TOPRIM_OLD (cd01026), UvrD (COG0210)

Seq: QBLQ01000082.1 Halanaerobium sp. isolate 6-U2 scaffold_89, whole genome shotgun sequence (8558 bp)
Overview 1 RT 1: 2-8503 bp Neighborhood of RT #1 [2, 8505] baeRF_family7 RVT-GII GIIM Tar Tar PDC1_DGC_like Tar Feature: gene Location: 2-604 bp Feature: domain Description: baeRF_family7 Location: 14-281 bp Feature: domain Description: baeRF_family7 Location: 14-281 bp Feature: gene Location: 1099-2547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1483-2101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1483 -2101 bp Feature: domain Description: GIIM Note: maturase Location: 2152-2383 bp Feature: domain Description: GIIM Note: maturase Location: 2152-23 83 bp Feature: gene Location: 2695-4887 bp Feature: domain Description: Tar Location: 3394-3700 bp Feature: domain Description: Tar Location: 3 3 94-3 700 bp Feature: domain Description: Tar Location: 3901-4882 bp Feature: domain Description: Tar Location: 3 901-4882 bp Feature: gene Location: 6535-8505 bp Feature: domain Description: PDC1_DGC_like Location: 6724-7039 bp Feature: domain Description: PDC1_DGC_like Location: 6724-703 9 bp Feature: domain Description: Tar Location: 7129-8503 bp Feature: domain Description: Tar Location: 7129-8503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), baeRF_family7 (pfam18849), PDC1_DGC_like (cd12914), Tar (COG0840)