myRT

myRT report for GCA_003070835.1_ASM307083v1

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Seq: QBLR01000456.1 Halanaerobium sp. isolate 7-U2-L scaffold_1451, whole genome shotgun sequence (1957 bp)
Overview 1 RT 1: 122-1955 bp Neighborhood of RT #1 [122, 1954] RVT-GII GIIM GlnK PBP2_UgpB Feature: gene Location: 122-844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131-410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 -41 0 bp Feature: domain Description: GIIM Note: maturase Location: 464-695 bp Feature: domain Description: GIIM Note: maturase Location: 464-695 bp Feature: gene Location: 948-1280 bp Feature: domain Description: GlnK Location: 951-1275 bp Feature: domain Description: GlnK Location: 951 -1 275 bp Feature: gene Location: 1520-1954 bp Feature: domain Description: PBP2_UgpB Location: 1598-1955 bp Feature: domain Description: PBP2_UgpB Location: 1 598-1 955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GlnK (COG0347), PBP2_UgpB (cd14748)

Seq: QBLR01000131.1 Halanaerobium sp. isolate 7-U2-L scaffold_339, whole genome shotgun sequence (9290 bp)
Overview 1 RT 1: 2344-7982 bp Neighborhood of RT #1 [2344, 7993] ZupT TMR_SDR_a RVT-GII PRK04201 ZupT Feature: gene Location: 2344-3201 bp Feature: domain Description: ZupT Location: 2416-3199 bp Feature: domain Description: ZupT Location: 2 416-3199 bp Feature: gene Location: 3434-4303 bp Feature: domain Description: TMR_SDR_a Location: 3446-4253 bp Feature: domain Description: TMR_SDR_a Location: 3446-42 53 bp Feature: gene Location: 4420-5868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4660-5284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4660-52 84 bp Feature: gene Location: 6583-7170 bp Feature: domain Description: PRK04201 Location: 6589-7168 bp Feature: domain Description: PRK042 01 Location: 6589-7168 bp Feature: gene Location: 7250-7993 bp Feature: domain Description: ZupT Location: 7262-7982 bp Feature: domain Description: ZupT Location: 72 62 -7982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ZupT (COG0428), TMR_SDR_a (cd05269), RVT-GII, PRK04201 (zinc transporter ZupT; Provisional)

Seq: QBLR01000147.1 Halanaerobium sp. isolate 7-U2-L scaffold_394, whole genome shotgun sequence (8251 bp)
Overview 1 RT 1: 2383-8005 bp Neighborhood of RT #1 [2383, 8169] FimC SdrD_B SdrD_B RVT-GII GIIM Feature: gene Location: 2383-3201 bp Feature: domain Description: FimC Location: 2422-2737 bp Feature: domain Description: FimC Location: 2422-273 7 bp Feature: gene Location: 3215-6274 bp Feature: domain Description: SdrD_B Location: 5711-5876 bp Feature: domain Description: SdrD_B Location: 5711-5876 bp Feature: domain Description: SdrD_B Location: 5981-6155 bp Feature: domain Description: SdrD_B Location: 5981-6155 bp Feature: gene Location: 6721-8169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7105-7720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7105-7720 bp Feature: domain Description: GIIM Note: maturase Location: 7774-8005 bp Feature: domain Description: GIIM Note: maturase Location: 7774-8005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), SdrD_B (pfam17210), RVT-GII, GIIM (pfam08388)

Seq: QBLR01000238.1 Halanaerobium sp. isolate 7-U2-L scaffold_636, whole genome shotgun sequence (5337 bp)
Overview 1 RT 1: 227-3243 bp Neighborhood of RT #1 [227, 3245] RVT-GII DMSOR_beta_like CODH Feature: gene Location: 227-442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260-422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260-4 22 bp Feature: gene Location: 466-1365 bp Feature: domain Description: DMSOR_beta_like Location: 739-1207 bp Feature: domain Description: DMSOR_beta_like Location: 739-1207 bp Feature: gene Location: 1362-3245 bp Feature: domain Description: CODH Location: 1410-3243 bp Feature: domain Description: CODH Location: 14 10-324 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DMSOR_beta_like (cd16374), CODH (cd01915)

Seq: QBLR01000023.1 Halanaerobium sp. isolate 7-U2-L scaffold_76, whole genome shotgun sequence (27750 bp)
Overview 1 RT 1: 62-4209 bp Neighborhood of RT #1 [62, 4226] RVT-GII PBP2_OpuAC_like COG1033 Feature: gene Location: 62-364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173-350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173-35 0 bp Feature: gene Location: 819-1700 bp Feature: domain Description: PBP2_OpuAC_like Location: 921-1677 bp Feature: domain Description: PBP2_OpuAC_like Location: 921-1677 bp Feature: gene Location: 1929-4226 bp Feature: domain Description: COG1033 Location: 1947-4209 bp Feature: domain Description: COG1033 Location: 1947-4209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PBP2_OpuAC_like (cd13639), COG1033 (Predicted exporter protein, RND superfamily )

Seq: QBLR01000031.1 Halanaerobium sp. isolate 7-U2-L scaffold_88, whole genome shotgun sequence (25278 bp)
Overview 1 RT 1: 19262-25276 bp Neighborhood of RT #1 [19262, 25275] GIY-YIG_COG1833 pcrA RVT-GII Intron_maturas2 HNHc pcrA DNA_ligase_aden Feature: gene Location: 19262-19705 bp Feature: domain Description: GIY-YIG_COG1833 Location: 19286-19616 bp Feature: domain Description: GIY-YIG_COG1833 Location: 19286 -196 16 bp Feature: gene Location: 19736-20509 bp Feature: domain Description: pcrA Location: 19757-20498 bp Feature: domain Description: pcrA Location: 19757-20498 bp Feature: gene Location: 21098-22942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21362-22199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2136 2-22199 bp Feature: domain Description: Intron_maturas2 Location: 22268-22634 bp Feature: domain Description: Intron_maturas2 Location: 2226 8-226 34 bp Feature: domain Description: HNHc Note: nucleases Location: 22754-22913 bp Feature: domain Description: HNHc Note: nucleases Location: 22754-22913 bp Feature: gene Location: 23134-24444 bp Feature: domain Description: pcrA Location: 23137-24436 bp Feature: domain Description: pcrA Location: 23137-24436 bp Feature: gene Location: 24457-25275 bp Feature: domain Description: DNA_ligase_aden Location: 24481-25276 bp Feature: domain Description: DNA_ligase_aden Location: 24481-25276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIY-YIG_COG1833 (cd10441), pcrA (TIGR01073), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DNA_ligase_aden (pfam01653)

Seq: QBLR01000351.1 Halanaerobium sp. isolate 7-U2-L scaffold_984, whole genome shotgun sequence (3353 bp)
Overview 1 RT 1: 387-3235 bp Neighborhood of RT #1 [387, 3246] group_II_RT_mat RVT-GII INT_RitC_C_like RVT-GII GIIM KOG3216 Feature: gene Location: 387-809 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 606-807 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 606-807 bp Feature: gene Location: 825-1190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 828-1152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 828-1152 bp Feature: gene Location: 1248-1478 bp Feature: domain Description: INT_RitC_C_like Location: 1251-1398 bp Feature: domain Description: INT_RitC_C_like Location: 1251-1398 bp Feature: gene Location: 1935-2594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1938-2145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1938-2145 bp Feature: domain Description: GIIM Note: maturase Location: 2199-2427 bp Feature: domain Description: GIIM Note: maturase Location: 2199-2427 bp Feature: gene Location: 2743-3246 bp Feature: domain Description: KOG3216 Location: 2770-3235 bp Feature: domain Description: KOG3216 Location: 27 7 0-3235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, INT_RitC_C_like (cd01182), GIIM (pfam08388), KOG3216 (KOG3216, Diamine acetyltransferase )

Seq: QBLR01000354.1 Halanaerobium sp. isolate 7-U2-L scaffold_997, whole genome shotgun sequence (3287 bp)
Overview 1 RT 1: 1-2623 bp Neighborhood of RT #1 [1, 2787] dCache_3 RVT-GII GIIM Feature: gene Location: 1-1191 bp Feature: domain Description: dCache_3 Location: 133-835 bp Feature: domain Description: dCache_3 Location: 133-8 35 bp Feature: gene Location: 1339-2787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1723-2338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1723-2338 bp Feature: domain Description: GIIM Note: maturase Location: 2392-2623 bp Feature: domain Description: GIIM Note: maturase Location: 2392-2623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dCache_3 (pfam14827), RVT-GII, GIIM (pfam08388)