myRT

myRT report for GCA_003072445.1_ASM307244v1

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Seq: CP024992.1 Escherichia coli O104:H4 strain LB226692 chromosome (5299262 bp)
Overview 1 RT 1: 782803-785717 bp 2 RT 2: 978617-984698 bp 3 RT 3: 998655-1006030 bp 4 RT 4: 2404938-2411871 bp 5 RT 5: 2421702-2429023 bp Neighborhood of RT #1 [782803, 785782] RVT-GII GIIM PHA02517 Neighborhood of RT #2 [978617, 984700] InsE PHA02517 RVT-GII GIIM PHA02517 TonB-siderophor Neighborhood of RT #3 [998655, 1006095] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #4 [2404938, 2411871] VI_ClpV1 PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #5 [2421702, 2429088] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 782803-782946 bp Feature: gene Location: 782971-783174 bp Feature: gene Location: 783242-784765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 783515-784247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78351 5-784247 bp Feature: domain Description: GIIM Note: maturase Location: 784322-784520 bp Feature: domain Description: GIIM Note: maturase Location: 784322-784520 bp Feature: gene Location: 784719-785144 bp Feature: gene Location: 785357-785782 bp Feature: domain Description: PHA02517 Location: 785381-785717 bp Feature: domain Description: PHA0251 7 Location: 785381 -78571 7 bp Feature: gene Location: 978617-978943 bp Feature: domain Description: InsE Location: 978620-978941 bp Feature: domain Description: InsE Location: 978620-978941 bp Feature: gene Location: 979141-979422 bp Feature: domain Description: PHA02517 Location: 979147-979357 bp Feature: domain Description: PHA0251 7 Location: 9791 47-979357 bp Feature: gene Location: 980014-981537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 980287-981019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 980287-981 01 9 bp Feature: domain Description: GIIM Note: maturase Location: 981094-981292 bp Feature: domain Description: GIIM Note: maturase Location: 981 094-981 292 bp Feature: gene Location: 981714-982100 bp Feature: domain Description: PHA02517 Location: 981717-982098 bp Feature: domain Description: PHA0251 7 Location: 981 71 7-982098 bp Feature: gene Location: 982502-984700 bp Feature: domain Description: TonB-siderophor Location: 982637-984698 bp Feature: domain Description: TonB-siderophor Location: 982637-984698 bp Feature: gene Location: 998655-1002773 bp Feature: domain Description: ESPR Location: 998658-998727 bp Feature: domain Description: ESPR Location: 998658-998727 bp Feature: domain Description: Peptidase_S6 Location: 998808-1000980 bp Feature: domain Description: Peptidase_S6 Location: 998808-1 000980 bp Feature: domain Description: autotrans_barl Location: 1001544-1002771 bp Feature: domain Description: autotrans_barl Location: 1 001 544-1 002771 bp Feature: gene Location: 1002938-1003324 bp Feature: domain Description: PHA02517 Location: 1002941-1003322 bp Feature: domain Description: PHA0251 7 Location: 1 002941 -1 003322 bp Feature: gene Location: 1003501-1005024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1003774-1004506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 003774-1 004506 bp Feature: domain Description: GIIM Note: maturase Location: 1004581-1004779 bp Feature: domain Description: GIIM Note: maturase Location: 1 004581 -1 004779 bp Feature: gene Location: 1004978-1005403 bp Feature: gene Location: 1005616-1006095 bp Feature: domain Description: PHA02517 Location: 1005676-1006030 bp Feature: domain Description: PHA0251 7 Location: 1 005676-1 006030 bp Feature: gene Location: 2404938-2407487 bp Feature: domain Description: VI_ClpV1 Location: 2404974-2407434 bp Feature: domain Description: VI_ClpV1 Location: 2404974-2407434 bp Feature: gene Location: 2407915-2408487 bp Feature: domain Description: PHA02517 Location: 2408068-2408422 bp Feature: domain Description: PHA0251 7 Location: 2408068-2408422 bp Feature: gene Location: 2409079-2410602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2409352-2410084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2409352-241 0084 bp Feature: domain Description: GIIM Note: maturase Location: 2410159-2410357 bp Feature: domain Description: GIIM Note: maturase Location: 241 01 59-241 0357 bp Feature: gene Location: 2410779-2411165 bp Feature: domain Description: PHA02517 Location: 2410782-2411163 bp Feature: domain Description: PHA0251 7 Location: 241 0782-241 1 1 63 bp Feature: gene Location: 2411722-2411871 bp Feature: gene Location: 2421702-2425820 bp Feature: domain Description: ESPR Location: 2421705-2421774 bp Feature: domain Description: ESPR Location: 2421 705-2421 774 bp Feature: domain Description: Peptidase_S6 Location: 2421855-2424027 bp Feature: domain Description: Peptidase_S6 Location: 2421 855-2424027 bp Feature: domain Description: autotrans_barl Location: 2424591-2425818 bp Feature: domain Description: autotrans_barl Location: 2424591 -242581 8 bp Feature: gene Location: 2425985-2426371 bp Feature: domain Description: PHA02517 Location: 2425988-2426369 bp Feature: domain Description: PHA0251 7 Location: 2425988-2426369 bp Feature: gene Location: 2426548-2428071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2426821-2427553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2426821 -2427553 bp Feature: domain Description: GIIM Note: maturase Location: 2427628-2427826 bp Feature: domain Description: GIIM Note: maturase Location: 2427628-2427826 bp Feature: gene Location: 2428025-2428450 bp Feature: gene Location: 2428663-2429088 bp Feature: domain Description: PHA02517 Location: 2428687-2429023 bp Feature: domain Description: PHA0251 7 Location: 2428687-2429023 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), TonB-siderophor (TIGR01783), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), VI_ClpV1 (TIGR03345)

Seq: CP024994.1 Escherichia coli O104:H4 strain LB226692 plasmid unnamed2, complete sequence (94462 bp)
Overview 1 RT 1: 4631-8621 bp 2 RT 2: 80198-84188 bp Neighborhood of RT #1 [4631, 8621] YkfC InsG RVT-GII GIIM PHA02517 Neighborhood of RT #2 [80198, 84188] YkfC InsG RVT-GII GIIM PHA02517 Feature: gene Location: 4631-4786 bp Feature: domain Description: YkfC Location: 4640-4781 bp Feature: domain Description: YkfC Location: 4640-4781 bp Feature: gene Location: 4953-6065 bp Feature: domain Description: InsG Location: 4956-5994 bp Feature: domain Description: InsG Location: 4956-5994 bp Feature: gene Location: 6158-7504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6254-6986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 54-6986 bp Feature: domain Description: GIIM Note: maturase Location: 7061-7259 bp Feature: domain Description: GIIM Note: maturase Location: 7061-72 59 bp Feature: gene Location: 7621-8067 bp Feature: domain Description: PHA02517 Location: 7624-8065 bp Feature: domain Description: PHA02 517 Location: 762 4-8065 bp Feature: gene Location: 8271-8621 bp Feature: gene Location: 80198-80353 bp Feature: domain Description: YkfC Location: 80207-80348 bp Feature: domain Description: YkfC Location: 802 07-80348 bp Feature: gene Location: 80520-81632 bp Feature: domain Description: InsG Location: 80523-81561 bp Feature: domain Description: InsG Location: 8052 3-81561 bp Feature: gene Location: 81725-83071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81821-82553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8182 1-82 553 bp Feature: domain Description: GIIM Note: maturase Location: 82628-82826 bp Feature: domain Description: GIIM Note: maturase Location: 82 62 8-82 82 6 bp Feature: gene Location: 83188-83634 bp Feature: domain Description: PHA02517 Location: 83191-83632 bp Feature: domain Description: PHA02 517 Location: 83191-83632 bp Feature: gene Location: 83838-84188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), InsG (COG3385), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)