myRT

myRT report for GCA_003074115.1_ASM307411v1

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Seq: CP029147.1 Pseudomonas aeruginosa strain AR_0443 chromosome (6776714 bp)
Overview 1 RT 1: 3192424-3199897 bp 2 RT 2: 4285165-4295473 bp 3 RT 3: 4311731-4320581 bp Neighborhood of RT #1 [3192424, 3199920] IS5 RVT-GII GIIM RVT-GII GIIM IS5 EAL Neighborhood of RT #2 [4285165, 4295475] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #3 [4311731, 4320610] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 3192424-3192972 bp Feature: gene Location: 3193580-3194119 bp Feature: domain Description: IS5 Location: 3193769-3194096 bp Feature: domain Description: IS5 Location: 31 93769-31 94096 bp Feature: gene Location: 3194612-3195880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3194825-3195482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 94825-31 95482 bp Feature: domain Description: GIIM Note: maturase Location: 3195560-3195782 bp Feature: domain Description: GIIM Note: maturase Location: 31 95560-31 95782 bp Feature: gene Location: 3196955-3198061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3196958-3197555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 96958-31 97555 bp Feature: domain Description: GIIM Note: maturase Location: 3197606-3197840 bp Feature: domain Description: GIIM Note: maturase Location: 31 97606-31 97840 bp Feature: gene Location: 3198182-3198592 bp Feature: domain Description: IS5 Location: 3198188-3198566 bp Feature: domain Description: IS5 Location: 31 981 88-31 98566 bp Feature: gene Location: 3199261-3199920 bp Feature: domain Description: EAL Location: 3199285-3199897 bp Feature: domain Description: EAL Location: 31 99285-31 99897 bp Feature: gene Location: 4285165-4286286 bp Feature: domain Description: COG3177 Location: 4285183-4286275 bp Feature: domain Description: COG31 77 Location: 42851 83-4286275 bp Feature: gene Location: 4286548-4286709 bp Feature: gene Location: 4287012-4288697 bp Feature: RT Description: RVT_N Location: 4287069-4287309 bp Feature: RT Description: RVT_N Location: 4287069-4287309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4287357-4287993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4287357-4287993 bp Feature: domain Description: GIIM Note: maturase Location: 4288047-4288278 bp Feature: domain Description: GIIM Note: maturase Location: 4288047-4288278 bp Feature: domain Description: HNH Note: nucleases Location: 4288530-4288668 bp Feature: domain Description: HNH Note: nucleases Location: 4288530-4288668 bp Feature: gene Location: 4289778-4293515 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 4289886-4290543 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 4289886-4290543 bp Feature: domain Description: PRK09776 Location: 4290756-4291227 bp Feature: domain Description: PRK09776 Location: 4290756-4291 227 bp Feature: domain Description: PAS Location: 4291272-4291809 bp Feature: domain Description: PAS Location: 4291 272-4291 809 bp Feature: domain Description: PRK10060 Location: 4291818-4293465 bp Feature: domain Description: PRK1 0060 Location: 4291 81 8-4293465 bp Feature: gene Location: 4293622-4295475 bp Feature: domain Description: PRK05658 Location: 4293634-4295473 bp Feature: domain Description: PRK05658 Location: 4293634-4295473 bp Feature: gene Location: 4311731-4312945 bp Feature: domain Description: PRK10770 Location: 4311743-4312937 bp Feature: domain Description: PRK1 0770 Location: 431 1 743-431 2937 bp Feature: gene Location: 4313004-4315805 bp Feature: domain Description: LptD Location: 4313199-4315791 bp Feature: domain Description: LptD Location: 431 31 99-431 5791 bp Feature: gene Location: 4315938-4317650 bp Feature: RT Description: RVT_N Location: 4315995-4316238 bp Feature: RT Description: RVT_N Location: 431 5995-431 6238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4316283-4316919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 6283-431 691 9 bp Feature: domain Description: YkfC Location: 4317126-4317279 bp Feature: domain Description: YkfC Location: 431 71 26-431 7279 bp Feature: domain Description: HNH Note: nucleases Location: 4317456-4317594 bp Feature: domain Description: HNH Note: nucleases Location: 431 7456-431 7594 bp Feature: gene Location: 4318923-4319939 bp Feature: domain Description: COG3178 Location: 4318926-4319925 bp Feature: domain Description: COG31 78 Location: 431 8926-431 9925 bp Feature: gene Location: 4319936-4320610 bp Feature: domain Description: NTP_transferase_like_1 Location: 4319942-4320581 bp Feature: domain Description: NTP_transferase_like_1 Location: 431 9942-4320581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388), EAL (smart00052), COG3177 (Fic family protein ), RVT_N (pfam13655), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)