myRT

myRT report for GCA_003074475.1_ASM307447v1

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Seq: PQCJ01000005.1 Escherichia coli strain BMX2_J05302_4/4TZP NODE_1_length_3211181_cov_32.1843_ID_1, whole genome shotgun sequence (3211181 bp)
Overview 1 RT 1: 1742973-1749425 bp Neighborhood of RT #1 [1742973, 1749425] AAA_15 RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 1742973-1743278 bp Feature: gene Location: 1744161-1746437 bp Feature: domain Description: AAA_15 Location: 1744194-1745202 bp Feature: domain Description: AAA_1 5 Location: 1 7441 94-1 745202 bp Feature: gene Location: 1746552-1747652 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1746735-1747263 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 746735-1 747263 bp Feature: gene Location: 1748308-1749144 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1748797-1748968 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1 748797-1 748968 bp Feature: gene Location: 1749174-1749425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)

Seq: PQCJ01000012.1 Escherichia coli strain BMX2_J05302_4/4TZP NODE_4_length_454139_cov_35.4334_ID_7, whole genome shotgun sequence (454139 bp)
Overview 1 RT 1: 409966-413303 bp Neighborhood of RT #1 [409966, 413303] YhhI YhhI YhhI YhhI RVT-GII GIIM Feature: gene Location: 409966-411102 bp Feature: domain Description: YhhI Location: 409969-410332 bp Feature: domain Description: YhhI Location: 409969-410332 bp Feature: domain Description: YhhI Location: 410389-410743 bp Feature: domain Description: YhhI Location: 410389-410743 bp Feature: domain Description: YhhI Location: 410761-411004 bp Feature: domain Description: YhhI Location: 410761-411004 bp Feature: gene Location: 411278-411538 bp Feature: domain Description: YhhI Location: 411353-411524 bp Feature: domain Description: YhhI Location: 411353-41152 4 bp Feature: gene Location: 411549-412799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 411753-412410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 411753-412 410 bp Feature: domain Description: GIIM Note: maturase Location: 412491-412713 bp Feature: domain Description: GIIM Note: maturase Location: 412 491-412 713 bp Feature: gene Location: 412823-413110 bp Feature: gene Location: 413163-413303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: PQCJ01000018.1 Escherichia coli strain BMX2_J05302_4/4TZP NODE_5_length_120467_cov_133.915_ID_9, whole genome shotgun sequence (120467 bp)
Overview 1 RT 1: 22631-24923 bp 2 RT 2: 35727-39439 bp Neighborhood of RT #1 [22631, 24988] PRK10173 PRK10173 RVT-GII PHA02517 Neighborhood of RT #2 [35727, 39477] PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 22631-23080 bp Feature: domain Description: PRK10173 Location: 22634-23072 bp Feature: domain Description: PRK10173 Location: 2263 4-23 072 bp Feature: gene Location: 23064-23375 bp Feature: domain Description: PRK10173 Location: 23067-23286 bp Feature: domain Description: PRK10173 Location: 23 067-23 286 bp Feature: gene Location: 23414-23917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23687-23759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 687-23 759 bp Feature: gene Location: 23871-24296 bp Feature: gene Location: 24509-24988 bp Feature: domain Description: PHA02517 Location: 24569-24923 bp Feature: domain Description: PHA02517 Location: 24569-24923 bp Feature: gene Location: 35727-35870 bp Feature: gene Location: 35977-36456 bp Feature: domain Description: PHA02517 Location: 36037-36391 bp Feature: domain Description: PHA02517 Location: 3 603 7-3 63 91 bp Feature: gene Location: 37048-38571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37321-38053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 73 21-3 8053 bp Feature: domain Description: GIIM Note: maturase Location: 38128-38326 bp Feature: domain Description: GIIM Note: maturase Location: 3 8128-3 83 26 bp Feature: gene Location: 38748-39044 bp Feature: domain Description: PHA02517 Location: 38751-39000 bp Feature: domain Description: PHA02517 Location: 3 8751-3 9000 bp Feature: gene Location: 39073-39477 bp Feature: domain Description: InsE Location: 39103-39439 bp Feature: domain Description: InsE Location: 3 9103 -3 943 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), InsE (COG2963)