myRT

myRT report for GCA_003074495.1_ASM307449v1

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Seq: PQCK01000004.1 Escherichia coli strain BMX2_J05301_noTZP NODE_1_length_3999217_cov_28.081_ID_1, whole genome shotgun sequence (3999217 bp)
Overview 1 RT 1: 2249479-2255931 bp Neighborhood of RT #1 [2249479, 2255931] Nuc_deoxyrib_tr RVT-Retrons AAA_15 Feature: gene Location: 2249479-2249730 bp Feature: gene Location: 2249760-2250596 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 2250249-2250420 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 2250249-2250420 bp Feature: gene Location: 2251252-2252352 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2251435-2251963 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2251 435-2251 963 bp Feature: gene Location: 2252467-2254743 bp Feature: domain Description: AAA_15 Location: 2252500-2253508 bp Feature: domain Description: AAA_1 5 Location: 2252500-2253508 bp Feature: gene Location: 2255626-2255931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175)

Seq: PQCK01000006.1 Escherichia coli strain BMX2_J05301_noTZP NODE_4_length_148651_cov_60.3178_ID_7, whole genome shotgun sequence (148651 bp)
Overview 1 RT 1: 46939-49231 bp 2 RT 2: 59959-63747 bp Neighborhood of RT #1 [46939, 49296] PRK10173 PRK10173 RVT-GII PHA02517 Neighborhood of RT #2 [59959, 63785] InsE PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 46939-47388 bp Feature: domain Description: PRK10173 Location: 46942-47380 bp Feature: domain Description: PRK10173 Location: 46942 -47380 bp Feature: gene Location: 47372-47683 bp Feature: domain Description: PRK10173 Location: 47375-47594 bp Feature: domain Description: PRK10173 Location: 47375-47594 bp Feature: gene Location: 47722-48225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47995-48067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47995-48067 bp Feature: gene Location: 48179-48604 bp Feature: gene Location: 48817-49296 bp Feature: domain Description: PHA02517 Location: 48877-49231 bp Feature: domain Description: PHA02 517 Location: 48877-492 31 bp Feature: gene Location: 59959-60285 bp Feature: domain Description: InsE Location: 59962-60283 bp Feature: domain Description: InsE Location: 59962 -602 83 bp Feature: gene Location: 60285-60764 bp Feature: domain Description: PHA02517 Location: 60345-60699 bp Feature: domain Description: PHA02 517 Location: 60345-60699 bp Feature: gene Location: 61356-62879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61629-62361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6162 9-62 361 bp Feature: domain Description: GIIM Note: maturase Location: 62436-62634 bp Feature: domain Description: GIIM Note: maturase Location: 62 436-62 634 bp Feature: gene Location: 63056-63352 bp Feature: domain Description: PHA02517 Location: 63059-63308 bp Feature: domain Description: PHA02 517 Location: 63059-63308 bp Feature: gene Location: 63381-63785 bp Feature: domain Description: InsE Location: 63411-63747 bp Feature: domain Description: InsE Location: 63411-63747 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), GIIM (pfam08388)

Seq: PQCK01000007.1 Escherichia coli strain BMX2_J05301_noTZP NODE_5_length_39859_cov_27.7909_ID_9, whole genome shotgun sequence (39859 bp)
Overview 1 RT 1: 36680-39678 bp Neighborhood of RT #1 [36680, 39692] YhhI YhhI YhhI RVT-GII GIIM YhhI Feature: gene Location: 36680-37639 bp Feature: domain Description: YhhI Location: 36686-37031 bp Feature: domain Description: YhhI Location: 3 6686-3 703 1 bp Feature: domain Description: YhhI Location: 37088-37442 bp Feature: domain Description: YhhI Location: 3 7088-3 7442 bp Feature: domain Description: YhhI Location: 37442-37622 bp Feature: domain Description: YhhI Location: 3 7442-3 7622 bp Feature: gene Location: 37667-37807 bp Feature: gene Location: 38171-39421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38375-39032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 83 75-3 903 2 bp Feature: domain Description: GIIM Note: maturase Location: 39113-39335 bp Feature: domain Description: GIIM Note: maturase Location: 3 9113 -3 93 3 5 bp Feature: gene Location: 39432-39692 bp Feature: domain Description: YhhI Location: 39507-39678 bp Feature: domain Description: YhhI Location: 3 9507-3 9678 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388)