myRT

myRT report for GCA_003076155.1_ASM307615v1

Download annotations/find similar RTs

Seq: QDJZ01000079.1 Escherichia coli strain JEONG-9599 NODE_52_length_24538_cov_16.9024_ID_103, whole genome shotgun sequence (24538 bp)
Overview 1 RT 1: 11750-16186 bp Neighborhood of RT #1 [11750, 16194] DDE_Tnp_IS1 InsA RVT-GII PRK10276 umuC Feature: gene Location: 11750-12127 bp Feature: domain Description: DDE_Tnp_IS1 Location: 11753-12125 bp Feature: domain Description: DDE_Tnp_IS1 Location: 1 1 753-1 21 25 bp Feature: gene Location: 12172-12447 bp Feature: domain Description: InsA Location: 12175-12439 bp Feature: domain Description: InsA Location: 1 21 75-1 2439 bp Feature: gene Location: 12599-14086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13004-13694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3004-1 3694 bp Feature: gene Location: 14240-14923 bp Feature: domain Description: PRK10276 Location: 14543-14906 bp Feature: domain Description: PRK1 0276 Location: 1 4543-1 4906 bp Feature: gene Location: 14923-16194 bp Feature: domain Description: umuC Location: 14926-16186 bp Feature: domain Description: umuC Location: 1 4926-1 61 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: QDJZ01000083.1 Escherichia coli strain JEONG-9599 NODE_33_length_48760_cov_9.88617_ID_65, whole genome shotgun sequence (48760 bp)
Overview 1 RT 1: 44251-48133 bp Neighborhood of RT #1 [44251, 48138] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 44251-44967 bp Feature: domain Description: rph Location: 44254-44962 bp Feature: domain Description: rph Location: 442 54-44962 bp Feature: gene Location: 45018-45674 bp Feature: domain Description: pyrE Location: 45036-45669 bp Feature: domain Description: pyrE Location: 45036-45669 bp Feature: gene Location: 45972-46931 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46107-46656 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46107-46656 bp Feature: gene Location: 46977-47573 bp Feature: domain Description: slmA Location: 46983-47559 bp Feature: domain Description: slmA Location: 46983-47559 bp Feature: gene Location: 47680-48138 bp Feature: domain Description: dut Location: 47686-48133 bp Feature: domain Description: dut Location: 47686-48133 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)