myRT

myRT report for GCA_003076175.1_ASM307617v1

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Seq: QDKA01000007.1 Escherichia coli strain JEONG-9600 NODE_36_length_46880_cov_10.5115_ID_65, whole genome shotgun sequence (46880 bp)
Overview 1 RT 1: 629-4511 bp Neighborhood of RT #1 [629, 4516] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 629-1087 bp Feature: domain Description: dut Location: 635-1082 bp Feature: domain Description: dut Location: 635-1 082 bp Feature: gene Location: 1194-1790 bp Feature: domain Description: slmA Location: 1200-1776 bp Feature: domain Description: slmA Location: 1 200-1 776 bp Feature: gene Location: 1836-2795 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1971-2520 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 971 -2520 bp Feature: gene Location: 3093-3749 bp Feature: domain Description: pyrE Location: 3111-3744 bp Feature: domain Description: pyrE Location: 31 1 1 -3744 bp Feature: gene Location: 3800-4516 bp Feature: domain Description: rph Location: 3803-4511 bp Feature: domain Description: rph Location: 3803-451 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), dut (TIGR00576)

Seq: QDKA01000009.1 Escherichia coli strain JEONG-9600 NODE_50_length_24649_cov_16.5188_ID_105, whole genome shotgun sequence (24649 bp)
Overview 1 RT 1: 11861-16297 bp Neighborhood of RT #1 [11861, 16305] DDE_Tnp_IS1 InsA RVT-GII PRK10276 umuC Feature: gene Location: 11861-12238 bp Feature: domain Description: DDE_Tnp_IS1 Location: 11864-12236 bp Feature: domain Description: DDE_Tnp_IS1 Location: 11864-12 2 36 bp Feature: gene Location: 12283-12558 bp Feature: domain Description: InsA Location: 12286-12550 bp Feature: domain Description: InsA Location: 12 2 86-12 550 bp Feature: gene Location: 12710-14197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13115-13805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13115-13805 bp Feature: gene Location: 14351-15034 bp Feature: domain Description: PRK10276 Location: 14654-15017 bp Feature: domain Description: PRK102 76 Location: 14654-15017 bp Feature: gene Location: 15034-16305 bp Feature: domain Description: umuC Location: 15037-16297 bp Feature: domain Description: umuC Location: 15037-162 97 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)