myRT

myRT report for GCA_003076215.1_ASM307621v1

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Seq: QDKB01000164.1 Escherichia coli strain JEONG-9601 NODE_55_length_31984_cov_12.4455_ID_109, whole genome shotgun sequence (31984 bp)
Overview 1 RT 1: 646-4528 bp Neighborhood of RT #1 [646, 4533] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 646-1104 bp Feature: domain Description: dut Location: 652-1099 bp Feature: domain Description: dut Location: 652-1 099 bp Feature: gene Location: 1211-1807 bp Feature: domain Description: slmA Location: 1217-1793 bp Feature: domain Description: slmA Location: 1 21 7-1 793 bp Feature: gene Location: 1853-2812 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1988-2537 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 988-2537 bp Feature: gene Location: 3110-3766 bp Feature: domain Description: pyrE Location: 3128-3761 bp Feature: domain Description: pyrE Location: 31 28-3761 bp Feature: gene Location: 3817-4533 bp Feature: domain Description: rph Location: 3820-4528 bp Feature: domain Description: rph Location: 3820-4528 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), dut (TIGR00576)

Seq: QDKB01000194.1 Escherichia coli strain JEONG-9601 NODE_72_length_24760_cov_18.3134_ID_143, whole genome shotgun sequence (24760 bp)
Overview 1 RT 1: 11972-16408 bp Neighborhood of RT #1 [11972, 16416] DDE_Tnp_IS1 InsA RVT-GII PRK10276 umuC Feature: gene Location: 11972-12349 bp Feature: domain Description: DDE_Tnp_IS1 Location: 11975-12347 bp Feature: domain Description: DDE_Tnp_IS1 Location: 11975-12 347 bp Feature: gene Location: 12394-12669 bp Feature: domain Description: InsA Location: 12397-12661 bp Feature: domain Description: InsA Location: 12 397-12 661 bp Feature: gene Location: 12821-14308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13226-13916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 2 6-13916 bp Feature: gene Location: 14462-15145 bp Feature: domain Description: PRK10276 Location: 14765-15128 bp Feature: domain Description: PRK102 76 Location: 14765-1512 8 bp Feature: gene Location: 15145-16416 bp Feature: domain Description: umuC Location: 15148-16408 bp Feature: domain Description: umuC Location: 15148-16408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)