myRT

myRT report for GCA_003076235.1_ASM307623v1

Download annotations/find similar RTs

Seq: QDKC01000114.1 Escherichia coli strain JEONG-9602 NODE_10_length_95101_cov_9.61038_ID_19, whole genome shotgun sequence (95101 bp)
Overview 1 RT 1: 27390-31272 bp Neighborhood of RT #1 [27390, 31277] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 27390-28106 bp Feature: domain Description: rph Location: 27393-28101 bp Feature: domain Description: rph Location: 27393-281 01 bp Feature: gene Location: 28157-28813 bp Feature: domain Description: pyrE Location: 28175-28808 bp Feature: domain Description: pyrE Location: 281 75-28808 bp Feature: gene Location: 29111-30070 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29246-29795 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29246-29795 bp Feature: gene Location: 30116-30712 bp Feature: domain Description: slmA Location: 30122-30698 bp Feature: domain Description: slmA Location: 301 22-30698 bp Feature: gene Location: 30819-31277 bp Feature: domain Description: dut Location: 30825-31272 bp Feature: domain Description: dut Location: 30825-31 272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: QDKC01000167.1 Escherichia coli strain JEONG-9602 NODE_70_length_24538_cov_16.8682_ID_139, whole genome shotgun sequence (24538 bp)
Overview 1 RT 1: 11750-16186 bp Neighborhood of RT #1 [11750, 16194] DDE_Tnp_IS1 InsA RVT-GII PRK10276 umuC Feature: gene Location: 11750-12127 bp Feature: domain Description: DDE_Tnp_IS1 Location: 11753-12125 bp Feature: domain Description: DDE_Tnp_IS1 Location: 11753-12 12 5 bp Feature: gene Location: 12172-12447 bp Feature: domain Description: InsA Location: 12175-12439 bp Feature: domain Description: InsA Location: 12 175-12 439 bp Feature: gene Location: 12599-14086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13004-13694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13004-13694 bp Feature: gene Location: 14240-14923 bp Feature: domain Description: PRK10276 Location: 14543-14906 bp Feature: domain Description: PRK102 76 Location: 14543-14906 bp Feature: gene Location: 14923-16194 bp Feature: domain Description: umuC Location: 14926-16186 bp Feature: domain Description: umuC Location: 1492 6-16186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)