myRT

myRT report for GCA_003077415.1_ASM307741v1

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Seq: QDLV01000017.1 Salmonella enterica subsp. enterica serovar Gaminara strain 230 NODE_17_length_113997_cov_26.796, whole genome shotgun sequence (113997 bp)
Overview 1 RT 1: 3-4223 bp Neighborhood of RT #1 [3, 4381] Psu RVT-UG15 PRK09692 PRK11462 Feature: gene Location: 3-215 bp Feature: domain Description: Psu Location: 6-210 bp Feature: domain Description: Psu Location: 6-21 0 bp Feature: gene Location: 462-593 bp Feature: gene Location: 719-2341 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1130-1553 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 1 1 30-1 553 bp Feature: gene Location: 2357-3523 bp Feature: domain Description: PRK09692 Location: 2363-3509 bp Feature: domain Description: PRK09692 Location: 2363-3509 bp Feature: gene Location: 4067-4381 bp Feature: domain Description: PRK11462 Location: 4070-4223 bp Feature: domain Description: PRK1 1 462 Location: 4070-4223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG15, PRK09692 (Integrase; provisional), PRK11462 (putative transporter; Provisional)

Seq: QDLV01000033.1 Salmonella enterica subsp. enterica serovar Gaminara strain 230 NODE_33_length_37516_cov_28.9327, whole genome shotgun sequence (37516 bp)
Overview 1 RT 1: 19336-25898 bp Neighborhood of RT #1 [19336, 25918] HTH_XRE PRK09738 RVT_N RVT-GII YkfC HNHc FimD FimC Feature: gene Location: 19336-19605 bp Feature: domain Description: HTH_XRE Location: 19351-19453 bp Feature: domain Description: HTH_XRE Location: 19351-19453 bp Feature: gene Location: 20100-20279 bp Feature: domain Description: PRK09738 Location: 20103-20256 bp Feature: domain Description: PRK09738 Location: 2 0103-2 02 56 bp Feature: gene Location: 20836-22509 bp Feature: domain Description: RVT_N Location: 20896-21139 bp Feature: domain Description: RVT_N Location: 2 0896-2 1139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21184-21826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1184-2 182 6 bp Feature: domain Description: YkfC Location: 21955-22126 bp Feature: domain Description: YkfC Location: 2 1955-2 2 12 6 bp Feature: domain Description: HNHc Note: nucleases Location: 22324-22486 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 32 4-2 2 486 bp Feature: gene Location: 22795-25086 bp Feature: domain Description: FimD Location: 22822-25081 bp Feature: domain Description: FimD Location: 2 2 82 2 -2 5081 bp Feature: gene Location: 25223-25918 bp Feature: domain Description: FimC Location: 25238-25898 bp Feature: domain Description: FimC Location: 2 52 38-2 5898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), PRK09738 (small toxic polypeptide; Provisional), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), FimD (COG3188), FimC (COG3121)