myRT

myRT report for GCA_003104905.1_ASM310490v1

Download annotations/find similar RTs

Seq: PQAS01000028.1 Candidatus Methanoperedenaceae archaeon isolate FeB_1 FeB1_28, whole genome shotgun sequence (68772 bp)
Overview 1 RT 1: 46878-53510 bp Neighborhood of RT #1 [46878, 53821] COG4584 PRK06526 RVT_N RVT-GII RVT_N RVT-GII YwgA YdhJ Feature: gene Location: 46878-48116 bp Feature: domain Description: COG4584 Location: 46881-47724 bp Feature: domain Description: COG4584 Location: 46881 -47724 bp Feature: gene Location: 48121-48888 bp Feature: domain Description: PRK06526 Location: 48169-48859 bp Feature: domain Description: PRK06526 Location: 481 69-48859 bp Feature: gene Location: 48931-50094 bp Feature: domain Description: RVT_N Location: 49000-49243 bp Feature: domain Description: RVT_N Location: 49000-49243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49288-49948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49288-49948 bp Feature: gene Location: 50099-50371 bp Feature: gene Location: 50527-51225 bp Feature: domain Description: RVT_N Location: 50596-50839 bp Feature: domain Description: RVT_N Location: 50596-50839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50887-51145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50887-51 1 45 bp Feature: gene Location: 51978-52520 bp Feature: domain Description: YwgA Location: 52053-52380 bp Feature: domain Description: YwgA Location: 52053-52380 bp Feature: gene Location: 52517-53821 bp Feature: domain Description: YdhJ Location: 52532-53510 bp Feature: domain Description: YdhJ Location: 52532-5351 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), PRK06526 (transposase; Provisional), RVT_N (pfam13655), RVT-GII, YwgA (COG3465), YdhJ (COG1078)

Seq: PQAS01000053.1 Candidatus Methanoperedenaceae archaeon isolate FeB_1 FeB1_53, whole genome shotgun sequence (193124 bp)
Overview 1 RT 1: 185256-193058 bp Neighborhood of RT #1 [185256, 193123] UGD_SDR_e PRK09283 RVT-GII GIIM RVT-GII RVT-GII GIIM DUF4145 InsQ InsQ Feature: gene Location: 185256-186197 bp Feature: domain Description: UGD_SDR_e Location: 185259-186171 bp Feature: domain Description: UGD_SDR_e Location: 1852 59-186171 bp Feature: gene Location: 186611-187588 bp Feature: domain Description: PRK09283 Location: 186617-187571 bp Feature: domain Description: PRK092 83 Location: 186617-187571 bp Feature: gene Location: 188259-189050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188268-188499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1882 68-188499 bp Feature: domain Description: GIIM Note: maturase Location: 188553-188784 bp Feature: domain Description: GIIM Note: maturase Location: 188553-188784 bp Feature: gene Location: 189321-189542 bp Feature: gene Location: 189863-190162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190106-190151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190106-190151 bp Feature: gene Location: 190433-191113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190436-190727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190436-19072 7 bp Feature: domain Description: GIIM Note: maturase Location: 190772-190970 bp Feature: domain Description: GIIM Note: maturase Location: 190772 -190970 bp Feature: gene Location: 191311-191808 bp Feature: domain Description: DUF4145 Location: 191536-191716 bp Feature: domain Description: DUF4145 Location: 191536-191716 bp Feature: gene Location: 191993-193123 bp Feature: domain Description: InsQ Location: 191996-192272 bp Feature: domain Description: InsQ Location: 191996-192 2 72 bp Feature: domain Description: InsQ Location: 192395-193058 bp Feature: domain Description: InsQ Location: 192 395-193058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UGD_SDR_e (cd05230), PRK09283 (porphobilinogen synthase), RVT-GII, GIIM (pfam08388), DUF4145 (pfam13643), InsQ (COG0675)

Seq: PQAS01000054.1 Candidatus Methanoperedenaceae archaeon isolate FeB_1 FeB1_54, whole genome shotgun sequence (86789 bp)
Overview 1 RT 1: 81926-85448 bp Neighborhood of RT #1 [81926, 85448] RVT-GII GIIM Y1_Tnp Feature: gene Location: 81926-82087 bp Feature: gene Location: 82455-82598 bp Feature: gene Location: 82599-83849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82842-83463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82842-83 463 bp Feature: domain Description: GIIM Note: maturase Location: 83508-83712 bp Feature: domain Description: GIIM Note: maturase Location: 83 508-83 712 bp Feature: gene Location: 84105-84584 bp Feature: domain Description: Y1_Tnp Location: 84147-84492 bp Feature: domain Description: Y1_Tnp Location: 84147-84492 bp Feature: gene Location: 85197-85448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Y1_Tnp (pfam01797)