myRT

myRT report for GCA_003112125.1_ASM311212v1

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Seq: CP029220.1 Klebsiella pneumoniae strain L388 chromosome (5339840 bp)
Overview 1 RT 1: 1034523-1041006 bp 2 RT 2: 1277563-1282774 bp 3 RT 3: 1478242-1487470 bp 4 RT 4: 1503759-1507817 bp 5 RT 5: 1667655-1673316 bp 6 RT 6: 4647196-4650445 bp 7 RT 7: 5014800-5021632 bp 8 RT 8: 5090354-5094462 bp 9 RT 9: 5240977-5246854 bp Neighborhood of RT #1 [1034523, 1041008] YccC PRK10016 RVT-GII dacD SbcB Neighborhood of RT #2 [1277563, 1282806] MFS_ExuT_GudP_like PRK15440 RVT-GII PRK15440 IclR Neighborhood of RT #3 [1478242, 1487481] Wzy_C PHA02515 RVT-GII PHA01972 Neighborhood of RT #4 [1503759, 1507817] Terminase_2 RVT-GII Neighborhood of RT #5 [1667655, 1673393] DinI RVT-GII Phage_GPA dam Neighborhood of RT #6 [4647196, 4650837] YbjK int RVT-GII Neighborhood of RT #7 [5014800, 5021632] IS5 PRK05318 RVT-GII PRK10597 Neighborhood of RT #8 [5090354, 5094464] DinI RVT-GII PRK10276 umuC Neighborhood of RT #9 [5240977, 5246856] Rve PinE RVT-GII PRK10276 umuC Feature: gene Location: 1034523-1035581 bp Feature: domain Description: YccC Location: 1034529-1035567 bp Feature: domain Description: YccC Location: 1 034529-1 035567 bp Feature: gene Location: 1035680-1036153 bp Feature: domain Description: PRK10016 Location: 1035683-1036142 bp Feature: domain Description: PRK1 001 6 Location: 1 035683-1 0361 42 bp Feature: gene Location: 1036235-1037719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1036637-1037327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 036637-1 037327 bp Feature: gene Location: 1038240-1039409 bp Feature: domain Description: dacD Location: 1038249-1039404 bp Feature: domain Description: dacD Location: 1 038249-1 039404 bp Feature: gene Location: 1039584-1041008 bp Feature: domain Description: SbcB Location: 1039590-1041006 bp Feature: domain Description: SbcB Location: 1 039590-1 041 006 bp Feature: gene Location: 1277563-1278855 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 1277608-1278805 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 1 277608-1 278805 bp Feature: gene Location: 1278895-1279917 bp Feature: domain Description: PRK15440 Location: 1278901-1279915 bp Feature: domain Description: PRK1 5440 Location: 1 278901 -1 27991 5 bp Feature: gene Location: 1280008-1281492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1280410-1281100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 28041 0-1 281 1 00 bp Feature: gene Location: 1281825-1282010 bp Feature: domain Description: PRK15440 Location: 1281828-1281975 bp Feature: domain Description: PRK1 5440 Location: 1 281 828-1 281 975 bp Feature: gene Location: 1282021-1282806 bp Feature: domain Description: IclR Location: 1282048-1282774 bp Feature: domain Description: IclR Location: 1 282048-1 282774 bp Feature: gene Location: 1478242-1478910 bp Feature: domain Description: Wzy_C Location: 1478251-1478680 bp Feature: domain Description: Wzy_C Location: 1 478251 -1 478680 bp Feature: gene Location: 1479227-1481884 bp Feature: domain Description: PHA02515 Location: 1479239-1479584 bp Feature: domain Description: PHA0251 5 Location: 1 479239-1 479584 bp Feature: gene Location: 1482423-1483910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1482828-1483518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 482828-1 48351 8 bp Feature: gene Location: 1483826-1484248 bp Feature: gene Location: 1484725-1487481 bp Feature: domain Description: PHA01972 Location: 1484728-1487470 bp Feature: domain Description: PHA01 972 Location: 1 484728-1 487470 bp Feature: gene Location: 1503759-1504343 bp Feature: domain Description: Terminase_2 Location: 1503804-1504269 bp Feature: domain Description: Terminase_2 Location: 1 503804-1 504269 bp Feature: gene Location: 1504421-1504678 bp Feature: gene Location: 1505079-1506566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1505484-1506174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 505484-1 5061 74 bp Feature: gene Location: 1506663-1507001 bp Feature: gene Location: 1507197-1507817 bp Feature: gene Location: 1667655-1667888 bp Feature: domain Description: DinI Location: 1667700-1667883 bp Feature: domain Description: DinI Location: 1 667700-1 667883 bp Feature: gene Location: 1667900-1668088 bp Feature: gene Location: 1668196-1669680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1668598-1669288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 668598-1 669288 bp Feature: gene Location: 1670161-1672545 bp Feature: domain Description: Phage_GPA Location: 1670725-1671691 bp Feature: domain Description: Phage_GPA Location: 1 670725-1 671 691 bp Feature: gene Location: 1672542-1673393 bp Feature: domain Description: dam Location: 1672545-1673316 bp Feature: domain Description: dam Location: 1 672545-1 67331 6 bp Feature: gene Location: 4647196-4647759 bp Feature: domain Description: YbjK Location: 4647202-4647739 bp Feature: domain Description: YbjK Location: 4647202-4647739 bp Feature: gene Location: 4647882-4648934 bp Feature: domain Description: int Location: 4647885-4648884 bp Feature: domain Description: int Location: 4647885-4648884 bp Feature: gene Location: 4649350-4650837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4649755-4650445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4649755-4650445 bp Feature: gene Location: 5014800-5015780 bp Feature: domain Description: IS5 Location: 5014989-5015766 bp Feature: domain Description: IS5 Location: 501 4989-501 5766 bp Feature: gene Location: 5017332-5018693 bp Feature: domain Description: PRK05318 Location: 5017356-5018655 bp Feature: domain Description: PRK0531 8 Location: 501 7356-501 8655 bp Feature: gene Location: 5019531-5021018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5019936-5020626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501 9936-5020626 bp Feature: gene Location: 5021097-5021330 bp Feature: domain Description: PRK10597 Location: 5021100-5021325 bp Feature: domain Description: PRK1 0597 Location: 5021 1 00-5021 325 bp Feature: gene Location: 5021375-5021632 bp Feature: gene Location: 5090354-5090596 bp Feature: domain Description: DinI Location: 5090405-5090585 bp Feature: domain Description: DinI Location: 5090405-5090585 bp Feature: gene Location: 5090611-5090757 bp Feature: gene Location: 5091211-5092698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5091616-5092306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5091 61 6-5092306 bp Feature: gene Location: 5092777-5093196 bp Feature: domain Description: PRK10276 Location: 5092780-5093191 bp Feature: domain Description: PRK1 0276 Location: 5092780-50931 91 bp Feature: gene Location: 5093199-5094464 bp Feature: domain Description: umuC Location: 5093202-5094462 bp Feature: domain Description: umuC Location: 5093202-5094462 bp Feature: gene Location: 5240977-5241693 bp Feature: domain Description: Rve Location: 5240992-5241637 bp Feature: domain Description: Rve Location: 5240992-5241 637 bp Feature: gene Location: 5241699-5242208 bp Feature: domain Description: PinE Location: 5241747-5242200 bp Feature: domain Description: PinE Location: 5241 747-5242200 bp Feature: gene Location: 5243603-5245090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5244008-5244698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5244008-5244698 bp Feature: gene Location: 5245170-5245589 bp Feature: domain Description: PRK10276 Location: 5245173-5245584 bp Feature: domain Description: PRK1 0276 Location: 52451 73-5245584 bp Feature: gene Location: 5245591-5246856 bp Feature: domain Description: umuC Location: 5245594-5246854 bp Feature: domain Description: umuC Location: 5245594-5246854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), RVT-GII, dacD (PRK11397), SbcB (COG2925), MFS_ExuT_GudP_like (cd17319), PRK15440 (L-rhamnonate dehydratase; Provisional), IclR (pfam01614), Wzy_C (pfam04932), PHA02515 (hypothetical protein; Provisional)
PHA01972 (structural protein), Terminase_2 (pfam03592), DinI (pfam06183), Phage_GPA (pfam05840), dam (TIGR00571), YbjK (COG3226), int (PHA02601), IS5 (COG3039), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), PRK10597 (DNA damage-inducible protein I; Provisional)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), Rve (COG3316), PinE (COG1961)

Seq: CP029221.1 Klebsiella pneumoniae strain L388 plasmid p1-L388 (217870 bp)
Overview 1 RT 1: 201497-205360 bp Neighborhood of RT #1 [201497, 205360] HHA RVT-GII INT_Cre_C Feature: gene Location: 201497-201748 bp Feature: domain Description: HHA Location: 201545-201728 bp Feature: domain Description: HHA Location: 2 01545-2 0172 8 bp Feature: gene Location: 201783-202241 bp Feature: gene Location: 202266-203753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202671-203361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 02 671-2 03361 bp Feature: gene Location: 203841-204977 bp Feature: domain Description: INT_Cre_C Location: 204264-204918 bp Feature: domain Description: INT_Cre_C Location: 2 042 64-2 04918 bp Feature: gene Location: 205043-205360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HHA (pfam05321), RVT-GII, INT_Cre_C (cd00799)

Seq: CP029223.1 Klebsiella pneumoniae strain L388 plasmid p4-L388 (87095 bp)
Overview 1 RT 1: 12573-16163 bp Neighborhood of RT #1 [12573, 16163] PRK10276 RVT-GII DUF2913 Feature: gene Location: 12573-12998 bp Feature: domain Description: PRK10276 Location: 12624-12984 bp Feature: domain Description: PRK10276 Location: 12624-12984 bp Feature: gene Location: 13191-13403 bp Feature: gene Location: 13478-14887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13805-14495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 805-14495 bp Feature: gene Location: 14978-15592 bp Feature: domain Description: DUF2913 Location: 15008-15494 bp Feature: domain Description: DUF2913 Location: 15008-15494 bp Feature: gene Location: 15882-16163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DUF2913 (pfam11140)

Seq: CP029224.1 Klebsiella pneumoniae strain L388 plasmid p5-L388 (11970 bp)
Overview 1 RT 1: 199-2576 bp Neighborhood of RT #1 [199, 2576] RVT-GII Feature: gene Location: 199-1686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 604-1294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 604 -1294 bp Feature: gene Location: 1692-1859 bp Feature: gene Location: 2331-2576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CP029225.1 Klebsiella pneumoniae strain L388 plasmid pKPC-L388 (145851 bp)
Overview 1 RT 1: 23672-27112 bp 2 RT 2: 112080-116162 bp Neighborhood of RT #1 [23672, 27112] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [112080, 116299] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 23672-24094 bp Feature: domain Description: DUF1380 Location: 23675-23969 bp Feature: domain Description: DUF1380 Location: 23675 -23969 bp Feature: gene Location: 24091-24282 bp Feature: gene Location: 24596-26263 bp Feature: RT Description: RVT_N Location: 24644-24881 bp Feature: RT Description: RVT_N Location: 24644-24881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24932-25574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24932-25 5 74 bp Feature: domain Description: GIIM Note: maturase Location: 25625-25859 bp Feature: domain Description: GIIM Note: maturase Location: 25 625 -25 85 9 bp Feature: domain Description: HNHc Note: nucleases Location: 26069-26228 bp Feature: domain Description: HNHc Note: nucleases Location: 26069-26228 bp Feature: gene Location: 26543-26725 bp Feature: gene Location: 26837-27112 bp Feature: gene Location: 112080-112511 bp Feature: domain Description: PRK10276 Location: 112131-112494 bp Feature: domain Description: PRK10276 Location: 112131-112494 bp Feature: gene Location: 112709-112921 bp Feature: gene Location: 112996-114405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113323-114013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113323-114013 bp Feature: gene Location: 114654-115625 bp Feature: domain Description: StbA Location: 114657-115602 bp Feature: domain Description: StbA Location: 11465 7-115 602 bp Feature: gene Location: 115628-116299 bp Feature: domain Description: Plasmid_stab_B Location: 115643-115850 bp Feature: domain Description: Plasmid_stab_B Location: 115 643-115 85 0 bp Feature: domain Description: Plasmid_stab_B Location: 115955-116162 bp Feature: domain Description: Plasmid_stab_B Location: 115 95 5 -116162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)