myRT

myRT report for GCA_003113895.1_ASM311389v1

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Seq: BDUD01000001.1 Nostoc commune NIES-4072 DNA, scaffold: scaffold01, whole genome shotgun sequence (7147507 bp)
Overview 1 RT 1: 1531164-1538062 bp 2 RT 2: 2329624-2333797 bp 3 RT 3: 3130055-3136234 bp 4 RT 4: 3153085-3161281 bp 5 RT 5: 4193827-4200346 bp 6 RT 6: 4759195-4765807 bp 7 RT 7: 5427375-5434427 bp Neighborhood of RT #1 [1531164, 1538070] dCache_1 TMAO_torS RVT_N RVT-GII GIIM McrA RAYT Neighborhood of RT #2 [2329624, 2333946] Uma2 Uma2 RVT_N RVT-GII GIIM McrA DUF5615 DUF433 Neighborhood of RT #3 [3130055, 3136260] AcuC RVT_N RVT-GII GIIM McrA sensory_box PRK10060 Neighborhood of RT #4 [3153085, 3161331] 2A0108 MFS_OFA_like nirA RVT_N RVT-GII GIIM McrA QcrA HEAT_2 HEAT_2 HEAT_2 HEAT_2 Neighborhood of RT #5 [4193827, 4200351] NirD RVT_N RVT-GII GIIM McrA KOG3870 Neighborhood of RT #6 [4759195, 4765845] SnoaL HpnG RVT_N RVT-GII McrA AcrB AcrB AcrB AcrB Neighborhood of RT #7 [5427375, 5434468] PLN02233 RpfG RVT_N RVT-GII McrA Raf1_HTH Raf1_N RuBisCo_chap_C PRK05420 Feature: gene Location: 1531164-1533290 bp Feature: domain Description: dCache_1 Location: 1531284-1531995 bp Feature: domain Description: dCache_1 Location: 1 531 284-1 531 995 bp Feature: domain Description: TMAO_torS Location: 1532214-1533006 bp Feature: domain Description: TMAO_torS Location: 1 53221 4-1 533006 bp Feature: gene Location: 1533315-1533572 bp Feature: gene Location: 1533604-1535403 bp Feature: RT Description: RVT_N Location: 1533718-1533961 bp Feature: RT Description: RVT_N Location: 1 53371 8-1 533961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1534006-1534702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 534006-1 534702 bp Feature: domain Description: GIIM Note: maturase Location: 1534786-1535014 bp Feature: domain Description: GIIM Note: maturase Location: 1 534786-1 53501 4 bp Feature: domain Description: McrA Location: 1535110-1535374 bp Feature: domain Description: McrA Location: 1 5351 1 0-1 535374 bp Feature: gene Location: 1536058-1537608 bp Feature: gene Location: 1537663-1538070 bp Feature: domain Description: RAYT Location: 1537687-1538062 bp Feature: domain Description: RAYT Location: 1 537687-1 538062 bp Feature: gene Location: 2329624-2330295 bp Feature: domain Description: Uma2 Location: 2329678-2330047 bp Feature: domain Description: Uma2 Location: 2329678-2330047 bp Feature: gene Location: 2330381-2330593 bp Feature: domain Description: Uma2 Location: 2330426-2330579 bp Feature: domain Description: Uma2 Location: 2330426-2330579 bp Feature: gene Location: 2331282-2333081 bp Feature: RT Description: RVT_N Location: 2331396-2331639 bp Feature: RT Description: RVT_N Location: 2331 396-2331 639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2331684-2332380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2331 684-2332380 bp Feature: domain Description: GIIM Note: maturase Location: 2332464-2332692 bp Feature: domain Description: GIIM Note: maturase Location: 2332464-2332692 bp Feature: domain Description: McrA Location: 2332788-2333052 bp Feature: domain Description: McrA Location: 2332788-2333052 bp Feature: gene Location: 2333249-2333611 bp Feature: domain Description: DUF5615 Location: 2333261-2333507 bp Feature: domain Description: DUF561 5 Location: 2333261 -2333507 bp Feature: gene Location: 2333608-2333946 bp Feature: domain Description: DUF433 Location: 2333668-2333797 bp Feature: domain Description: DUF433 Location: 2333668-2333797 bp Feature: gene Location: 3130055-3130186 bp Feature: gene Location: 3130253-3131173 bp Feature: domain Description: AcuC Location: 3130265-3131162 bp Feature: domain Description: AcuC Location: 31 30265-31 31 1 62 bp Feature: gene Location: 3131385-3133184 bp Feature: RT Description: RVT_N Location: 3131499-3131742 bp Feature: RT Description: RVT_N Location: 31 31 499-31 31 742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3131787-3132483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 31 787-31 32483 bp Feature: domain Description: GIIM Note: maturase Location: 3132567-3132795 bp Feature: domain Description: GIIM Note: maturase Location: 31 32567-31 32795 bp Feature: domain Description: McrA Location: 3132891-3133155 bp Feature: domain Description: McrA Location: 31 32891 -31 331 55 bp Feature: gene Location: 3133721-3133924 bp Feature: gene Location: 3134275-3136260 bp Feature: domain Description: sensory_box Location: 3134476-3134833 bp Feature: domain Description: sensory_box Location: 31 34476-31 34833 bp Feature: domain Description: PRK10060 Location: 3134914-3136234 bp Feature: domain Description: PRK1 0060 Location: 31 3491 4-31 36234 bp Feature: gene Location: 3153085-3154587 bp Feature: domain Description: 2A0108 Location: 3153124-3154396 bp Feature: domain Description: 2A01 08 Location: 31 531 24-31 54396 bp Feature: domain Description: MFS_OFA_like Location: 3154429-3154525 bp Feature: domain Description: MFS_OFA_like Location: 31 54429-31 54525 bp Feature: gene Location: 3154883-3156538 bp Feature: domain Description: nirA Location: 3154892-3156515 bp Feature: domain Description: nirA Location: 31 54892-31 5651 5 bp Feature: gene Location: 3157578-3159377 bp Feature: RT Description: RVT_N Location: 3157692-3157935 bp Feature: RT Description: RVT_N Location: 31 57692-31 57935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3157980-3158676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 57980-31 58676 bp Feature: domain Description: GIIM Note: maturase Location: 3158760-3158988 bp Feature: domain Description: GIIM Note: maturase Location: 31 58760-31 58988 bp Feature: domain Description: McrA Location: 3159084-3159348 bp Feature: domain Description: McrA Location: 31 59084-31 59348 bp Feature: gene Location: 3159560-3160015 bp Feature: domain Description: QcrA Location: 3159647-3160004 bp Feature: domain Description: QcrA Location: 31 59647-31 60004 bp Feature: gene Location: 3160033-3161331 bp Feature: domain Description: HEAT_2 Location: 3160273-3160507 bp Feature: domain Description: HEAT_2 Location: 31 60273-31 60507 bp Feature: domain Description: HEAT_2 Location: 3160555-3160756 bp Feature: domain Description: HEAT_2 Location: 31 60555-31 60756 bp Feature: domain Description: HEAT_2 Location: 3160777-3160966 bp Feature: domain Description: HEAT_2 Location: 31 60777-31 60966 bp Feature: domain Description: HEAT_2 Location: 3161050-3161281 bp Feature: domain Description: HEAT_2 Location: 31 61 050-31 61 281 bp Feature: gene Location: 4193827-4193973 bp Feature: gene Location: 4194511-4195575 bp Feature: domain Description: NirD Location: 4194550-4194844 bp Feature: domain Description: NirD Location: 41 94550-41 94844 bp Feature: gene Location: 4196172-4197971 bp Feature: RT Description: RVT_N Location: 4196286-4196529 bp Feature: RT Description: RVT_N Location: 41 96286-41 96529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4196574-4197270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 96574-41 97270 bp Feature: domain Description: GIIM Note: maturase Location: 4197354-4197582 bp Feature: domain Description: GIIM Note: maturase Location: 41 97354-41 97582 bp Feature: domain Description: McrA Location: 4197678-4197942 bp Feature: domain Description: McrA Location: 41 97678-41 97942 bp Feature: gene Location: 4198003-4198788 bp Feature: gene Location: 4199119-4200351 bp Feature: domain Description: KOG3870 Location: 4199149-4200346 bp Feature: domain Description: KOG3870 Location: 41 991 49-4200346 bp Feature: gene Location: 4759195-4759866 bp Feature: domain Description: SnoaL Location: 4759567-4759810 bp Feature: domain Description: SnoaL Location: 4759567-475981 0 bp Feature: gene Location: 4760010-4760597 bp Feature: domain Description: HpnG Location: 4760067-4760535 bp Feature: domain Description: HpnG Location: 4760067-4760535 bp Feature: gene Location: 4760754-4762334 bp Feature: RT Description: RVT_N Location: 4760790-4761030 bp Feature: RT Description: RVT_N Location: 4760790-4761 030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4761087-4761750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4761 087-4761 750 bp Feature: domain Description: McrA Location: 4761987-4762323 bp Feature: domain Description: McrA Location: 4761 987-4762323 bp Feature: gene Location: 4762940-4763119 bp Feature: gene Location: 4763140-4765845 bp Feature: domain Description: AcrB Location: 4763185-4763710 bp Feature: domain Description: AcrB Location: 47631 85-476371 0 bp Feature: domain Description: AcrB Location: 4763770-4764649 bp Feature: domain Description: AcrB Location: 4763770-4764649 bp Feature: domain Description: AcrB Location: 4764745-4765147 bp Feature: domain Description: AcrB Location: 4764745-47651 47 bp Feature: domain Description: AcrB Location: 4765162-4765807 bp Feature: domain Description: AcrB Location: 47651 62-4765807 bp Feature: gene Location: 5427375-5428088 bp Feature: domain Description: PLN02233 Location: 5427381-5428080 bp Feature: domain Description: PLN02233 Location: 5427381 -5428080 bp Feature: gene Location: 5428176-5429114 bp Feature: domain Description: RpfG Location: 5428224-5428737 bp Feature: domain Description: RpfG Location: 5428224-5428737 bp Feature: gene Location: 5430263-5431843 bp Feature: RT Description: RVT_N Location: 5430299-5430539 bp Feature: RT Description: RVT_N Location: 5430299-5430539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5430596-5431259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5430596-5431 259 bp Feature: domain Description: McrA Location: 5431499-5431820 bp Feature: domain Description: McrA Location: 5431 499-5431 820 bp Feature: gene Location: 5431997-5433085 bp Feature: domain Description: Raf1_HTH Location: 5432057-5432231 bp Feature: domain Description: Raf1 _HTH Location: 5432057-5432231 bp Feature: domain Description: Raf1_N Location: 5432270-5432585 bp Feature: domain Description: Raf1 _N Location: 5432270-5432585 bp Feature: domain Description: RuBisCo_chap_C Location: 5432627-5433038 bp Feature: domain Description: RuBisCo_chap_C Location: 5432627-5433038 bp Feature: gene Location: 5433695-5434468 bp Feature: domain Description: PRK05420 Location: 5433707-5434427 bp Feature: domain Description: PRK05420 Location: 5433707-5434427 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dCache_1 (pfam02743), TMAO_torS (TIGR02956), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), RAYT (COG1943), Uma2 (pfam05685), DUF5615 (pfam18480), DUF433 (pfam04255)
AcuC (COG0123), sensory_box (TIGR00229), PRK10060 (cyclic di-GMP phosphodiesterase), 2A0108 (TIGR00886), MFS_OFA_like (cd17353), nirA (PRK09567), QcrA (COG0723), HEAT_2 (pfam13646), NirD (COG2146), KOG3870 (KOG3870, Uncharacterized conserved protein )
SnoaL (pfam07366), HpnG (TIGR03468), AcrB (COG0841), PLN02233 (ubiquinone biosynthesis methyltransferase), RpfG (COG3437), Raf1_HTH (pfam18579), Raf1_N (pfam18578), RuBisCo_chap_C (pfam18087), PRK05420 (aquaporin Z; Provisional)

Seq: BDUD01000002.1 Nostoc commune NIES-4072 DNA, scaffold: scaffold02, whole genome shotgun sequence (806781 bp)
Overview 1 RT 1: 203723-207398 bp Neighborhood of RT #1 [203723, 207398] ParM_like RVT_N RVT-GII RVT-GII GIIM McrA ParM_like Feature: gene Location: 203723-203932 bp Feature: domain Description: ParM_like Location: 203765-203909 bp Feature: domain Description: ParM_like Location: 2 03765-2 03909 bp Feature: gene Location: 204043-204189 bp Feature: gene Location: 204481-205437 bp Feature: RT Description: RVT_N Location: 204517-204751 bp Feature: RT Description: RVT_N Location: 2 04517-2 04751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204808-205372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 04808-2 05372 bp Feature: gene Location: 205521-206282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205554-205629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 05554-2 0562 9 bp Feature: domain Description: GIIM Note: maturase Location: 205686-205851 bp Feature: domain Description: GIIM Note: maturase Location: 2 05686-2 05851 bp Feature: domain Description: McrA Location: 205893-206205 bp Feature: domain Description: McrA Location: 2 05893-2 062 05 bp Feature: gene Location: 206404-207105 bp Feature: domain Description: ParM_like Location: 206440-207049 bp Feature: domain Description: ParM_like Location: 2 06440-2 07049 bp Feature: gene Location: 207108-207398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParM_like (cd10227), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)