myRT

myRT report for GCA_003114835.1_ASM311483v1

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Seq: BFBA01000012.1 Leptospira sp. E30 DNA, LKO_contig_12, whole genome shotgun sequence (280861 bp)
Overview 1 RT 1: 12892-19573 bp 2 RT 2: 48155-54021 bp Neighborhood of RT #1 [12892, 19614] TPR DUF4263 RVT-UG8 RVT-UG3 HTH_XRE Gp49 Neighborhood of RT #2 [48155, 54032] RVT-Retrons protease_degS integrase_gron integrase_gron PRK09077 Feature: gene Location: 12892-13959 bp Feature: domain Description: TPR Location: 13015-13672 bp Feature: domain Description: TPR Location: 1 301 5-1 3672 bp Feature: gene Location: 14166-15386 bp Feature: domain Description: DUF4263 Location: 14883-15351 bp Feature: domain Description: DUF4263 Location: 1 4883-1 5351 bp Feature: gene Location: 15712-17595 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 16195-16648 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 61 95-1 6648 bp Feature: gene Location: 17588-18784 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 17894-18338 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1 7894-1 8338 bp Feature: gene Location: 18954-19271 bp Feature: domain Description: HTH_XRE Location: 19071-19227 bp Feature: domain Description: HTH_XRE Location: 1 9071 -1 9227 bp Feature: gene Location: 19237-19614 bp Feature: domain Description: Gp49 Location: 19321-19573 bp Feature: domain Description: Gp49 Location: 1 9321 -1 9573 bp Feature: gene Location: 48155-48412 bp Feature: gene Location: 48426-48929 bp Feature: gene Location: 49141-50712 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49291-49861 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49291 -49861 bp Feature: domain Description: protease_degS Location: 50230-50656 bp Feature: domain Description: protease_degS Location: 50230-50656 bp Feature: gene Location: 50940-52043 bp Feature: domain Description: integrase_gron Location: 51177-51714 bp Feature: domain Description: integrase_gron Location: 51 1 77-51 71 4 bp Feature: domain Description: integrase_gron Location: 51822-52038 bp Feature: domain Description: integrase_gron Location: 51 822-52038 bp Feature: gene Location: 52431-54032 bp Feature: domain Description: PRK09077 Location: 52440-54021 bp Feature: domain Description: PRK09077 Location: 52440-54021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), DUF4263 (pfam14082), RVT-UG8, RVT-UG3, HTH_XRE (smart00530), Gp49 (pfam05973), RVT-Retrons, protease_degS (TIGR02038), integrase_gron (TIGR02249), PRK09077 (L-aspartate oxidase; Provisional)