myRT

myRT report for GCA_003114975.1_ASM311497v1

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Seq: BFCO01000028.1 Escherichia coli MH13-051M DNA, contig_28_1, whole genome shotgun sequence (2430 bp)
Overview 1 RT 1: 93-2222 bp Neighborhood of RT #1 [93, 2222] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 93-1760 bp Feature: domain Description: RVT_N Location: 141-378 bp Feature: domain Description: RVT_N Location: 1 41 -378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1 071 bp Feature: domain Description: GIIM Note: maturase Location: 1122-1356 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 22-1 356 bp Feature: domain Description: HNHc Note: nucleases Location: 1566-1725 bp Feature: domain Description: HNHc Note: nucleases Location: 1 566-1 725 bp Feature: gene Location: 2040-2222 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: BFCO01000038.1 Escherichia coli MH13-051M DNA, contig_38_1, whole genome shotgun sequence (56539 bp)
Overview 1 RT 1: 27340-35041 bp Neighborhood of RT #1 [27340, 35178] proA RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 27340-28593 bp Feature: domain Description: proA Location: 27367-28558 bp Feature: domain Description: proA Location: 2 7367-2 8558 bp Feature: gene Location: 29147-29617 bp Feature: gene Location: 29964-33173 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30492-30981 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30492 -30981 bp Feature: domain Description: nitrilase Location: 32487-33084 bp Feature: domain Description: nitrilase Location: 32 487-33084 bp Feature: gene Location: 33468-34271 bp Feature: domain Description: AbiEi_3_N Location: 33501-33762 bp Feature: domain Description: AbiEi_3_N Location: 33501-33762 bp Feature: domain Description: AbiEi_3 Location: 33774-34230 bp Feature: domain Description: AbiEi_3 Location: 33774-342 30 bp Feature: gene Location: 34258-35178 bp Feature: domain Description: AbiEii Location: 34300-35041 bp Feature: domain Description: AbiEii Location: 34300-35041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: BFCO01000100.1 Escherichia coli MH13-051M DNA, contig_94_1, whole genome shotgun sequence (41559 bp)
Overview 1 RT 1: 35198-38524 bp Neighborhood of RT #1 [35198, 38524] HTH_XRE RVT-Retrons FRG Feature: gene Location: 35198-35590 bp Feature: gene Location: 35627-35947 bp Feature: domain Description: HTH_XRE Location: 35642-35801 bp Feature: domain Description: HTH_XRE Location: 3 5642-3 5801 bp Feature: gene Location: 35913-36863 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36093-36636 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 6093 -3 663 6 bp Feature: gene Location: 36972-38336 bp Feature: domain Description: FRG Location: 37539-37824 bp Feature: domain Description: FRG Location: 3 753 9-3 7824 bp Feature: gene Location: 38375-38524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, FRG (smart00901)