myRT

myRT report for GCA_003114975.2_ASM311497v2

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Seq: AP018572.2 Escherichia coli MH13-051M plasmid pMH13-051M_1 DNA, complete genome (111544 bp)
Overview 1 RT 1: 48207-51810 bp Neighborhood of RT #1 [48207, 51935] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 48207-48413 bp Feature: gene Location: 48495-48770 bp Feature: gene Location: 49344-51011 bp Feature: domain Description: RVT_N Location: 49392-49629 bp Feature: domain Description: RVT_N Location: 49392-49629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49680-50322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49680-50322 bp Feature: domain Description: GIIM Note: maturase Location: 50373-50607 bp Feature: domain Description: GIIM Note: maturase Location: 50373-50607 bp Feature: domain Description: HNHc Note: nucleases Location: 50817-50976 bp Feature: domain Description: HNHc Note: nucleases Location: 5081 7-50976 bp Feature: gene Location: 51126-51461 bp Feature: gene Location: 51513-51935 bp Feature: domain Description: DUF1380 Location: 51516-51810 bp Feature: domain Description: DUF1 380 Location: 51 51 6-51 81 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: AP018574.2 Escherichia coli MH13-051M plasmid pMH13-051M_3 DNA, complete genome (74653 bp)
Overview 1 RT 1: 455-3639 bp 2 RT 2: 6747-9364 bp Neighborhood of RT #1 [455, 3639] RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [6747, 9364] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 455-691 bp Feature: gene Location: 735-1019 bp Feature: gene Location: 1593-2897 bp Feature: domain Description: RVT_N Location: 1641-1878 bp Feature: domain Description: RVT_N Location: 1641-1878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1929-2571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192 9-2 571 bp Feature: domain Description: GIIM Note: maturase Location: 2622-2844 bp Feature: domain Description: GIIM Note: maturase Location: 2 62 2 -2 844 bp Feature: gene Location: 2962-3294 bp Feature: domain Description: HNHc Note: nucleases Location: 3100-3259 bp Feature: domain Description: HNHc Note: nucleases Location: 3100-32 59 bp Feature: gene Location: 3409-3639 bp Feature: gene Location: 6747-6926 bp Feature: gene Location: 6930-7100 bp Feature: gene Location: 7205-8053 bp Feature: domain Description: RVT_N Location: 7340-7574 bp Feature: domain Description: RVT_N Location: 7340-7574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7655-8045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7655-8045 bp Feature: gene Location: 8129-8914 bp Feature: domain Description: GIIM Note: maturase Location: 8300-8516 bp Feature: domain Description: GIIM Note: maturase Location: 8300-8516 bp Feature: domain Description: HNHc Note: nucleases Location: 8726-8879 bp Feature: domain Description: HNHc Note: nucleases Location: 872 6-8879 bp Feature: gene Location: 9029-9364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: BFCO01000028.1 Escherichia coli MH13-051M DNA, contig_28_1, whole genome shotgun sequence (2430 bp)
Overview 1 RT 1: 93-2222 bp Neighborhood of RT #1 [93, 2222] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 93-1760 bp Feature: domain Description: RVT_N Location: 141-378 bp Feature: domain Description: RVT_N Location: 141-3 78 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1071 bp Feature: domain Description: GIIM Note: maturase Location: 1122-1356 bp Feature: domain Description: GIIM Note: maturase Location: 1122-13 56 bp Feature: domain Description: HNHc Note: nucleases Location: 1566-1725 bp Feature: domain Description: HNHc Note: nucleases Location: 1566-1725 bp Feature: gene Location: 2040-2222 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: BFCO01000038.1 Escherichia coli MH13-051M DNA, contig_38_1, whole genome shotgun sequence (56539 bp)
Overview 1 RT 1: 27340-35041 bp Neighborhood of RT #1 [27340, 35178] proA RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 27340-28593 bp Feature: domain Description: proA Location: 27367-28558 bp Feature: domain Description: proA Location: 27367-28558 bp Feature: gene Location: 29147-29617 bp Feature: gene Location: 29964-33173 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30492-30981 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 304 92-30981 bp Feature: domain Description: nitrilase Location: 32487-33084 bp Feature: domain Description: nitrilase Location: 324 87-33084 bp Feature: gene Location: 33468-34271 bp Feature: domain Description: AbiEi_3_N Location: 33501-33762 bp Feature: domain Description: AbiEi_3_N Location: 33501-33762 bp Feature: domain Description: AbiEi_3 Location: 33774-34230 bp Feature: domain Description: AbiEi_3 Location: 33774 -34 230 bp Feature: gene Location: 34258-35178 bp Feature: domain Description: AbiEii Location: 34300-35041 bp Feature: domain Description: AbiEii Location: 34 300-3504 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: BFCO01000100.1 Escherichia coli MH13-051M DNA, contig_94_1, whole genome shotgun sequence (41559 bp)
Overview 1 RT 1: 35198-38524 bp Neighborhood of RT #1 [35198, 38524] HTH_XRE RVT-Retrons FRG Feature: gene Location: 35198-35590 bp Feature: gene Location: 35627-35947 bp Feature: domain Description: HTH_XRE Location: 35642-35801 bp Feature: domain Description: HTH_XRE Location: 35 642-35 801 bp Feature: gene Location: 35913-36863 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36093-36636 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36093-36636 bp Feature: gene Location: 36972-38336 bp Feature: domain Description: FRG Location: 37539-37824 bp Feature: domain Description: FRG Location: 375 39-37824 bp Feature: gene Location: 38375-38524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, FRG (smart00901)