myRT

myRT report for GCA_003115275.1_ASM311527v1

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Seq: BFDD01000085.1 Klebsiella pneumoniae MH17-553M DNA, contig_55_1, whole genome shotgun sequence (63713 bp)
Overview 1 RT 1: 54360-57654 bp Neighborhood of RT #1 [54360, 57668] RVT-GII PRK10276 Feature: gene Location: 54360-54575 bp Feature: gene Location: 54842-55072 bp Feature: gene Location: 55306-56841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55711-56449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5571 1 -56449 bp Feature: gene Location: 56892-57125 bp Feature: gene Location: 57243-57668 bp Feature: domain Description: PRK10276 Location: 57246-57654 bp Feature: domain Description: PRK1 0276 Location: 57246-57654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: BFDD01000106.1 Klebsiella pneumoniae MH17-553M DNA, contig_72_1, whole genome shotgun sequence (9357 bp)
Overview 1 RT 1: 3129-6717 bp Neighborhood of RT #1 [3129, 6782] Tra5 RVT-GII GIIM PHA02517 Feature: gene Location: 3129-3818 bp Feature: domain Description: Tra5 Location: 3234-3660 bp Feature: domain Description: Tra5 Location: 32 34-3660 bp Feature: gene Location: 3970-4155 bp Feature: gene Location: 4242-5765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4515-5247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4515-52 47 bp Feature: domain Description: GIIM Note: maturase Location: 5322-5520 bp Feature: domain Description: GIIM Note: maturase Location: 532 2 -552 0 bp Feature: gene Location: 5719-6144 bp Feature: gene Location: 6357-6782 bp Feature: domain Description: PHA02517 Location: 6381-6717 bp Feature: domain Description: PHA02 517 Location: 6381-6717 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: BFDD01000109.1 Klebsiella pneumoniae MH17-553M DNA, contig_74_1, whole genome shotgun sequence (8018 bp)
Overview 1 RT 1: 319-7187 bp Neighborhood of RT #1 [319, 7189] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 319-1047 bp Feature: domain Description: FimC Location: 367-1030 bp Feature: domain Description: FimC Location: 3 67-103 0 bp Feature: gene Location: 1079-3688 bp Feature: domain Description: FimD Location: 1136-3677 bp Feature: domain Description: FimD Location: 113 6-3 677 bp Feature: gene Location: 3688-5766 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4096-4540 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4096-4540 bp Feature: gene Location: 5823-6263 bp Feature: domain Description: Integrase_1 Location: 5829-6045 bp Feature: domain Description: Integrase_1 Location: 5829-6045 bp Feature: gene Location: 6524-7189 bp Feature: domain Description: INT_P4_C Location: 6629-7187 bp Feature: domain Description: INT_P4_C Location: 6629-7187 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)