myRT

myRT report for GCA_003115315.1_ASM311531v1

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Seq: BFDF01000125.1 Klebsiella pneumoniae MH16-519D DNA, contig_54_1, whole genome shotgun sequence (11538 bp)
Overview 1 RT 1: 4350-11203 bp Neighborhood of RT #1 [4350, 11220] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 4350-5015 bp Feature: domain Description: INT_P4_C Location: 4455-5013 bp Feature: domain Description: INT_P4_C Location: 4455-501 3 bp Feature: gene Location: 5276-5716 bp Feature: domain Description: Integrase_1 Location: 5282-5498 bp Feature: domain Description: Integrase_1 Location: 5282-5498 bp Feature: gene Location: 5773-7851 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 6181-6625 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 61 81 -6625 bp Feature: gene Location: 7851-10460 bp Feature: domain Description: FimD Location: 7908-10449 bp Feature: domain Description: FimD Location: 7908-1 0449 bp Feature: gene Location: 10492-11220 bp Feature: domain Description: FimC Location: 10540-11203 bp Feature: domain Description: FimC Location: 1 0540-1 1 203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: BFDF01000175.1 Klebsiella pneumoniae MH16-519D DNA, contig_89_1, whole genome shotgun sequence (10497 bp)
Overview 1 RT 1: 6046-9254 bp Neighborhood of RT #1 [6046, 9254] PRK10276 RVT-GII Feature: gene Location: 6046-6471 bp Feature: domain Description: PRK10276 Location: 6049-6457 bp Feature: domain Description: PRK102 76 Location: 6049-6457 bp Feature: gene Location: 6589-6822 bp Feature: gene Location: 6873-8408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7278-8016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 78-8016 bp Feature: gene Location: 8642-8872 bp Feature: gene Location: 8931-9254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: BFDF01000222.1 Klebsiella pneumoniae MH16-519D DNA, contig_119_1, whole genome shotgun sequence (5485 bp)
Overview 1 RT 1: 3-2933 bp Neighborhood of RT #1 [3, 2998] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 3-293 bp Feature: domain Description: PHA02517 Location: 6-294 bp Feature: domain Description: PHA02517 Location: 6-294 bp Feature: gene Location: 458-1981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 731-1463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 1-1463 bp Feature: domain Description: GIIM Note: maturase Location: 1538-1736 bp Feature: domain Description: GIIM Note: maturase Location: 153 8-173 6 bp Feature: gene Location: 1935-2360 bp Feature: gene Location: 2573-2998 bp Feature: domain Description: PHA02517 Location: 2597-2933 bp Feature: domain Description: PHA02517 Location: 2597-293 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)