myRT

myRT report for GCA_003117755.1_ASM311775v1

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Seq: QDUC01000001.1 Salmonella enterica subsp. enterica serovar Braenderup strain 12 NODE_1_length_453975_cov_27.852, whole genome shotgun sequence (453975 bp)
Overview 1 RT 1: 167666-173971 bp Neighborhood of RT #1 [167666, 173973] 5 RVT-UG11 PRK10201 PRK05658 Feature: gene Location: 167666-169366 bp Feature: domain Description: 5 Location: 168890-169184 bp Feature: domain Description: 5 Location: 1 68890-1 691 84 bp Feature: gene Location: 169496-169663 bp Feature: gene Location: 170273-171037 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 170396-170849 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 1 70396-1 70849 bp Feature: gene Location: 171361-171867 bp Feature: domain Description: PRK10201 Location: 171364-171862 bp Feature: domain Description: PRK1 0201 Location: 1 71 364-1 71 862 bp Feature: gene Location: 171991-173973 bp Feature: domain Description: PRK05658 Location: 172129-173971 bp Feature: domain Description: PRK05658 Location: 1 721 29-1 73971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 5 (PHA02596), RVT-UG11, PRK10201 (G/U mismatch-specific DNA glycosylase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)

Seq: QDUC01000020.1 Salmonella enterica subsp. enterica serovar Braenderup strain 12 NODE_20_length_60030_cov_56.4143, whole genome shotgun sequence (60030 bp)
Overview 1 RT 1: 28570-33504 bp Neighborhood of RT #1 [28570, 33542] Multi_Drug_Res RVT-GII GIIM Zn_Tnp_IS91 Y2_Tnp FmrO Feature: gene Location: 28570-28917 bp Feature: domain Description: Multi_Drug_Res Location: 28579-28852 bp Feature: domain Description: Multi_Drug_Res Location: 2 8579-2 8852 bp Feature: gene Location: 29250-29468 bp Feature: gene Location: 29590-30939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29872-30490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9872 -30490 bp Feature: domain Description: GIIM Note: maturase Location: 30538-30742 bp Feature: domain Description: GIIM Note: maturase Location: 30538-30742 bp Feature: gene Location: 31101-32393 bp Feature: domain Description: Zn_Tnp_IS91 Location: 31146-31419 bp Feature: domain Description: Zn_Tnp_IS91 Location: 31146-31419 bp Feature: domain Description: Y2_Tnp Location: 31557-32046 bp Feature: domain Description: Y2 _Tnp Location: 31557-32 046 bp Feature: gene Location: 32721-33542 bp Feature: domain Description: FmrO Location: 32760-33504 bp Feature: domain Description: FmrO Location: 32 760-33504 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Multi_Drug_Res (pfam00893), RVT-GII, GIIM (pfam08388), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), FmrO (pfam07091)