myRT

myRT report for GCA_003118775.1_ASM311877v1

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Seq: QDOJ01000014.1 Salmonella enterica subsp. enterica serovar Montevideo strain 164 NODE_14_length_86938_cov_54.901, whole genome shotgun sequence (86938 bp)
Overview 1 RT 1: 1521-6081 bp Neighborhood of RT #1 [1521, 6140] PRK13699 RVT_N RVT-GII GIIM HNHc DUF1281 DUF1281_C Feature: gene Location: 1521-1742 bp Feature: gene Location: 1743-2567 bp Feature: domain Description: PRK13699 Location: 1956-2565 bp Feature: domain Description: PRK1 3699 Location: 1 956-2565 bp Feature: gene Location: 2977-4677 bp Feature: RT Description: RVT_N Location: 3031-3274 bp Feature: RT Description: RVT_N Location: 3031 -3274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3319-3955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 9-3955 bp Feature: domain Description: GIIM Note: maturase Location: 4006-4240 bp Feature: domain Description: GIIM Note: maturase Location: 4006-4240 bp Feature: domain Description: HNHc Note: nucleases Location: 4471-4621 bp Feature: domain Description: HNHc Note: nucleases Location: 4471 -4621 bp Feature: gene Location: 4992-5144 bp Feature: gene Location: 5214-6140 bp Feature: domain Description: DUF1281 Location: 5307-5835 bp Feature: domain Description: DUF1 281 Location: 5307-5835 bp Feature: domain Description: DUF1281_C Location: 5841-6081 bp Feature: domain Description: DUF1 281 _C Location: 5841 -6081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: QDOJ01000015.1 Salmonella enterica subsp. enterica serovar Montevideo strain 164 NODE_15_length_82047_cov_31.724, whole genome shotgun sequence (82047 bp)
Overview 1 RT 1: 44646-48921 bp Neighborhood of RT #1 [44646, 48921] PRK10473 RVT-Retrons Feature: gene Location: 44646-45833 bp Feature: domain Description: PRK10473 Location: 44649-45825 bp Feature: domain Description: PRK10473 Location: 44649-4582 5 bp Feature: gene Location: 46178-46387 bp Feature: gene Location: 46734-47669 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46845-47430 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46845-47430 bp Feature: gene Location: 47669-48631 bp Feature: gene Location: 48658-48921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons