myRT

myRT report for GCA_003118875.1_ASM311887v1

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Seq: QDOO01000016.1 Salmonella enterica subsp. enterica serovar Gaminara strain 159 NODE_16_length_113998_cov_24.0017, whole genome shotgun sequence (113998 bp)
Overview 1 RT 1: 3-4223 bp Neighborhood of RT #1 [3, 4381] Psu RVT-UG15 PRK09692 PRK11462 Feature: gene Location: 3-215 bp Feature: domain Description: Psu Location: 6-210 bp Feature: domain Description: Psu Location: 6-21 0 bp Feature: gene Location: 462-593 bp Feature: gene Location: 719-2341 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1130-1553 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 1 1 30-1 553 bp Feature: gene Location: 2357-3523 bp Feature: domain Description: PRK09692 Location: 2363-3509 bp Feature: domain Description: PRK09692 Location: 2363-3509 bp Feature: gene Location: 4067-4381 bp Feature: domain Description: PRK11462 Location: 4070-4223 bp Feature: domain Description: PRK1 1 462 Location: 4070-4223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG15, PRK09692 (Integrase; provisional), PRK11462 (putative transporter; Provisional)

Seq: QDOO01000033.1 Salmonella enterica subsp. enterica serovar Gaminara strain 159 NODE_33_length_37510_cov_34.1819, whole genome shotgun sequence (37510 bp)
Overview 1 RT 1: 19330-25892 bp Neighborhood of RT #1 [19330, 25912] HTH_XRE PRK09738 RVT_N RVT-GII YkfC HNHc FimD FimC Feature: gene Location: 19330-19599 bp Feature: domain Description: HTH_XRE Location: 19345-19447 bp Feature: domain Description: HTH_XRE Location: 19345-19447 bp Feature: gene Location: 20094-20273 bp Feature: domain Description: PRK09738 Location: 20097-20250 bp Feature: domain Description: PRK09738 Location: 2 0097-2 02 50 bp Feature: gene Location: 20830-22503 bp Feature: domain Description: RVT_N Location: 20890-21133 bp Feature: domain Description: RVT_N Location: 2 0890-2 1133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21178-21820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1178-2 182 0 bp Feature: domain Description: YkfC Location: 21949-22120 bp Feature: domain Description: YkfC Location: 2 1949-2 2 12 0 bp Feature: domain Description: HNHc Note: nucleases Location: 22318-22480 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 318-2 2 480 bp Feature: gene Location: 22789-25080 bp Feature: domain Description: FimD Location: 22816-25075 bp Feature: domain Description: FimD Location: 2 2 816-2 5075 bp Feature: gene Location: 25217-25912 bp Feature: domain Description: FimC Location: 25232-25892 bp Feature: domain Description: FimC Location: 2 52 32 -2 5892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), PRK09738 (small toxic polypeptide; Provisional), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), FimD (COG3188), FimC (COG3121)