myRT

myRT report for GCA_003120875.1_ASM312087v1

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Seq: QDSH01000020.1 Salmonella enterica subsp. enterica serovar Braenderup strain 59 NODE_20_length_60031_cov_55.3396, whole genome shotgun sequence (60031 bp)
Overview 1 RT 1: 28571-33505 bp Neighborhood of RT #1 [28571, 33543] Multi_Drug_Res RVT-GII GIIM Zn_Tnp_IS91 Y2_Tnp FmrO Feature: gene Location: 28571-28918 bp Feature: domain Description: Multi_Drug_Res Location: 28580-28853 bp Feature: domain Description: Multi_Drug_Res Location: 28580-28853 bp Feature: gene Location: 29251-29469 bp Feature: gene Location: 29591-30940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29873-30491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29873-30491 bp Feature: domain Description: GIIM Note: maturase Location: 30539-30743 bp Feature: domain Description: GIIM Note: maturase Location: 30539-30743 bp Feature: gene Location: 31102-32394 bp Feature: domain Description: Zn_Tnp_IS91 Location: 31147-31420 bp Feature: domain Description: Zn_Tnp_IS91 Location: 31 1 47-31 420 bp Feature: domain Description: Y2_Tnp Location: 31558-32047 bp Feature: domain Description: Y2_Tnp Location: 31 558-32047 bp Feature: gene Location: 32722-33543 bp Feature: domain Description: FmrO Location: 32761-33505 bp Feature: domain Description: FmrO Location: 32761 -33505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Multi_Drug_Res (pfam00893), RVT-GII, GIIM (pfam08388), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), FmrO (pfam07091)

Seq: QDSH01000002.1 Salmonella enterica subsp. enterica serovar Braenderup strain 59 NODE_2_length_454123_cov_25.7833, whole genome shotgun sequence (454123 bp)
Overview 1 RT 1: 167666-173971 bp Neighborhood of RT #1 [167666, 173973] 5 RVT-UG11 PRK10201 PRK05658 Feature: gene Location: 167666-169366 bp Feature: domain Description: 5 Location: 168890-169184 bp Feature: domain Description: 5 Location: 168890-169184 bp Feature: gene Location: 169496-169663 bp Feature: gene Location: 170273-171037 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 170396-170849 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 170396-170849 bp Feature: gene Location: 171361-171867 bp Feature: domain Description: PRK10201 Location: 171364-171862 bp Feature: domain Description: PRK102 01 Location: 171364-171862 bp Feature: gene Location: 171991-173973 bp Feature: domain Description: PRK05658 Location: 172129-173971 bp Feature: domain Description: PRK05658 Location: 172 12 9-173971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 5 (PHA02596), RVT-UG11, PRK10201 (G/U mismatch-specific DNA glycosylase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)